Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0180
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1013 - 7931756-7935109 31 0.30
06_01_0350 + 2534422-2535615 31 0.52
12_02_0407 - 18654134-18654172,18654913-18655803 30 0.91
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378... 29 2.1
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 2.1
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744... 28 3.7
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 28 3.7
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 27 4.9
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 27 4.9
12_01_0801 + 7351171-7351198,7351383-7352020,7352098-7352559,735... 27 6.4
06_03_0262 + 18905352-18905481,18905570-18906003,18906082-189063... 27 6.4
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153... 27 6.4
05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664 27 6.4
03_05_0088 + 20664580-20664696,20664796-20665218,20665297-206655... 27 6.4
02_03_0337 + 17898732-17899370,17899516-17899977,17900058-179006... 27 6.4
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 27 8.5
03_04_0008 - 16274158-16274458,16274791-16275623,16275706-162761... 27 8.5
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 27 8.5
02_02_0590 - 11894721-11895188,11895684-11895851 27 8.5
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.5 bits (68), Expect = 0.30
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 300 GYEPARHLHVHPSPEFQGPQRVSGHR 223
G+EP R + +HP+P+ + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.52
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 170 PWNSNAQAEKKTLPGPLGGVFRP 102
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 0.91
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 27 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 191
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>12_02_0969 -
24936399-24936699,24936779-24936949,24937032-24937852,
24937946-24938407,24938486-24938890
Length = 719
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C ++ VP
Sbjct: 248 VHPTPRAQHDTNPSHHRSSCASIEVP 273
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.7 bits (61), Expect = 2.1
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = -3
Query: 235 IRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGT 56
I+ P M S + + GFHG L+ KL PDL + HF LVF G
Sbjct: 188 IKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGA 244
Query: 55 I 53
I
Sbjct: 245 I 245
>12_02_0096 -
13573612-13573632,13573846-13573884,13574160-13574493,
13574660-13574830,13574913-13575730,13575812-13576114,
13576352-13577085,13577174-13577303
Length = 849
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + +VP
Sbjct: 348 VHPTPRAQHDASPSQHRSSCASTKVP 373
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 291 PARHLHVHPSPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELER 154
P+ H +H S P+R RR+CGAL + + D + + R
Sbjct: 18 PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVTVRR 63
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 306 GYGYEPARHLHVHPSPEFQGPQRVSGHRRKCGALRVP 196
G+ +EP L HPSP+ GPQ ++ G P
Sbjct: 23 GFRFEPKEELVEHPSPQ-PGPQAIASIASSDGEFSSP 58
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 331 ALHLGDLLRIWVRTGATSPRTSLT*ISRSAESIRTPPQMRCSSRSEP 191
A H G I VRT + TS + A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
>12_01_0801 +
7351171-7351198,7351383-7352020,7352098-7352559,
7352641-7353105
Length = 530
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 335 VHPTPRAQHDASPSQHRSSCASTEVP 360
>06_03_0262 +
18905352-18905481,18905570-18906003,18906082-18906303,
18906381-18906842,18906935-18907755,18907838-18908008,
18908088-18908347,18908453-18908508,18908786-18908824,
18909711-18909764
Length = 882
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 375 VHPTPRAQHDASPSQHRSSCSSTEVP 400
>06_02_0270 -
13613853-13614153,13614233-13614403,13614486-13615318,
13615401-13615746,13615940-13616127,13616238-13616408
Length = 669
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 194 VHPTPRAQHDTSPSQHRSSCASTEVP 219
>05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664
Length = 248
Score = 27.1 bits (57), Expect = 6.4
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +3
Query: 6 GNPVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEG 185
G V + PGSG V +IVP V G W R + F F + +E
Sbjct: 13 GCGVRVIVPGSGGVQVIVPGG--GGVHPGG-DWRRTTKSRRNR-FRFSARPEIKVAALEE 68
Query: 186 RYGS-EREEH 212
+GS E EEH
Sbjct: 69 EHGSGEEEEH 78
>03_05_0088 +
20664580-20664696,20664796-20665218,20665297-20665518,
20665597-20666058,20666140-20666300,20666422-20666973,
20667056-20667125,20667141-20667226,20667306-20667673,
20668002-20668018
Length = 825
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 367 VHPTPRAQHDASPSQHRSSCASTEVP 392
>02_03_0337 +
17898732-17899370,17899516-17899977,17900058-17900688,
17900819-17900888,17900971-17901141,17901221-17901479,
17901918-17901956,17902900-17902914
Length = 761
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 326 VHPTPRAQHDASPSQHRSSCASTEVP 351
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 26.6 bits (56), Expect = 8.5
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 170 PWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*RRGNDY*N-GSAAGFRNRNR 12
P + A+ +++T P G + W+TPSN R R G + G + G R+R+R
Sbjct: 1578 PRYTPAKTKQETEPMGTGFDRQETWLTPSNGRGGRGGRGRGSRGGSRGGRSRSR 1631
>03_04_0008 -
16274158-16274458,16274791-16275623,16275706-16276167,
16276245-16276882,16277068-16277197
Length = 787
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + VP
Sbjct: 369 VHPTPRAQYDASPSQHRSSCASTEVP 394
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 424 RHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIW 299
RH P++ + EV+ + L L Y ++ L + +LL +W
Sbjct: 102 RHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLW 143
>02_02_0590 - 11894721-11895188,11895684-11895851
Length = 211
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 54 IVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCL 152
++ S + V GN P +E+ G ++L CL
Sbjct: 70 VIQSPINLQVEHGNDLTPTSVSEKPGNNYLPCL 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,539,322
Number of Sequences: 37544
Number of extensions: 309648
Number of successful extensions: 1051
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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