Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0178
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    30   0.40 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.70 
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   8.6  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.6  

>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 396 QMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENH 509
           +  +H I+ +  W+N IP    Y L   + R+++ EN+
Sbjct: 309 EFTKHWINRSLSWVNSIPVFGKYLLLSVEERQKSLENY 346


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 150 ARKIRGRPENAGPDPVRNVRRFSRV 76
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -2

Query: 399 FGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNALF*LAVG 247
           FG+++ V    A + RL+   H  +    +   CV+T + H   +  +A+G
Sbjct: 471 FGHIEGVWEIAADHLRLISGAHDGVVKVWEACECVHTLKNHSEPVTSVALG 521


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 396 GYLKRVIVTPAVYPRLLEFLHVDIQST 316
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,925
Number of Sequences: 5004
Number of extensions: 63417
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)