Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0176
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    27   2.8  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   3.7  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   4.9  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    26   4.9  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    25   8.6  

>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 292 TKYSSSIFSPL*AL*FVQRKLSAHLDTHRRAPR*DFD 402
           T + + I SPL      Q  LS H+ TH  AP   FD
Sbjct: 141 TDFEAGIDSPL----LCQASLSTHVKTHNNAPLTSFD 173


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +2

Query: 308 AFLARFEHSNLFNVNCRPTSTLTEEHRDRILILNRRFLERRLTDDILRKRVSITAD 475
           A L ++EH  +   NC+P+    ++ +  I +L +++ E +    I  K+     D
Sbjct: 15  ALLKKWEHEYVHTNNCKPSKEDVKK-QPEIALLYKQYYELKRESSITPKKAKTKVD 69


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 217 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 110
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 271 ISVLFCGFQNSEVMINRDNWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 110
           I  L C F N+E ++NR  W      V G  +G + +     ++ ++   IKNE
Sbjct: 92  IKSLQCLFCNNEGLLNRQEWFEHSFHVHGLNIGLADN---IVYINRLLEKIKNE 142


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
 Frame = -2

Query: 253 GFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 110
           G+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 145 GYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,366
Number of Sequences: 5004
Number of extensions: 42874
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)