Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0176
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408...    31   0.71 
05_04_0235 + 19291204-19291769,19291860-19292250                       28   5.0  
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475...    27   8.7  
09_02_0573 - 10804171-10805096,10805188-10805377,10805920-108063...    27   8.7  
03_02_0011 - 4909292-4909434,4909520-4909626,4910100-4910171,491...    27   8.7  
01_05_0005 - 16886553-16886946,16887079-16887404                       27   8.7  

>07_03_1756 -
           29239137-29239325,29239741-29240259,29240693-29240800,
           29240856-29241155,29241730-29241831,29243042-29243209,
           29243878-29243991,29244184-29244288,29244372-29244502,
           29244794-29244918,29245001-29245172,29245277-29245316,
           29245636-29245722,29245803-29245868,29246412-29246510,
           29246714-29246836,29247066-29247107,29247195-29247260,
           29247362-29247553,29247672-29247737,29248839-29249141
          Length = 1038

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 466 DTDTFAEYIVGEPAF*KTPVQYQNPIAVLFG---ECRGGPTIYVEQIRV 329
           D+    +Y VG+P F    +  Q P+ V+ G      GG T+Y+E  +V
Sbjct: 826 DSSNLGDY-VGKPVFQAERIYEQTPVGVVMGLAWTAMGGSTLYIETTKV 873


>05_04_0235 + 19291204-19291769,19291860-19292250
          Length = 318

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 262 LFCGFQNSEVMINRDNWGHSYCDVRGEILGSSQDEHQRK 146
           L CGF   + + NR  +   YCDV G   GS+ D + ++
Sbjct: 270 LECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQR 308


>11_01_0596 +
           4755453-4755490,4755675-4756047,4757739-4758940,
           4759026-4759392
          Length = 659

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 463 YHRGCVHRQRGAQMQHELFNRNNFSVRYWSWNYRGC 570
           YHR  +HR RG+ + H    R     ++  W  +GC
Sbjct: 518 YHRNNLHRTRGSYITHGRERRYELFDKW--WKQKGC 551


>09_02_0573 -
           10804171-10805096,10805188-10805377,10805920-10806363,
           10806689-10807552,10809269-10809802
          Length = 985

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 332 SAQSGLKMLLEYFVHGIIEYDLGSILW 252
           + Q G++ L E   + +  YDLG +LW
Sbjct: 780 ACQEGIQQLCETTAYKVTFYDLGHVLW 806


>03_02_0011 -
           4909292-4909434,4909520-4909626,4910100-4910171,
           4910713-4910803,4911136-4911272,4911377-4911417,
           4911681-4911746,4912756-4913082
          Length = 327

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -2

Query: 298 ISCME**NMISVLFCGFQNS-EVMINRDNWGHSYCDVRGEIL 176
           +SC+E  +  +++ CG + +  +++ +  WGHS+  V  E+L
Sbjct: 208 LSCVEALSA-ALIICGEEETAHLLLGKFKWGHSFLSVNRELL 248


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 523 RNNFSVRYWSWNYRGC 570
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,567,859
Number of Sequences: 37544
Number of extensions: 276324
Number of successful extensions: 639
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)