Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0175
         (777 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2JHJ2 Cluster: Putative chromosome partitioning protei...    35   2.0  
UniRef50_UPI0001552FC9 Cluster: PREDICTED: hypothetical protein;...    35   2.6  
UniRef50_UPI0000DD8174 Cluster: PREDICTED: hypothetical protein;...    33   6.0  
UniRef50_A3YG00 Cluster: Transcriptional regulator; n=2; Proteob...    33   6.0  
UniRef50_A5BM32 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_Q2JHJ2 Cluster: Putative chromosome partitioning protein
           ParA; n=2; Synechococcus|Rep: Putative chromosome
           partitioning protein ParA - Synechococcus sp. (strain
           JA-2-3B'a(2-13)) (Cyanobacteria bacteriumYellowstone
           B-Prime)
          Length = 260

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -3

Query: 571 KSIRCLHSPELSYRHNMRVILIDLTKRAIRSLLRTETGG 455
           KS  C+H+ +L+ +   RV+LIDLT +A  S L  E  G
Sbjct: 16  KSTLCVHAAQLTAQRGYRVLLIDLTSQATASNLYLEGAG 54


>UniRef50_UPI0001552FC9 Cluster: PREDICTED: hypothetical protein;
           n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 52

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 434 LICPCP*CACNRIPMLTNTSLNRRARARTVLPTRSGPSSNALPPRN 297
           + C  P  + N  P+L NTS  RR RA  +L  + GP    + PRN
Sbjct: 5   VFCLDPRASGNPEPLLFNTSALRRQRALGLLDHQGGPEHGTISPRN 50


>UniRef50_UPI0000DD8174 Cluster: PREDICTED: hypothetical protein;
           n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 256

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 404 NRIPMLTNTSLNRRARARTVLPTRSGPSSNALPPRNRSRFNVPGTTFTGRIRTDRPTIPA 225
           +++P  T +SL+   +     PT S P  + LPP NRS  + P  T        +P +P 
Sbjct: 67  SQLPPPTRSSLSYLLQTTPTSPTPSKPLLSQLPPPNRSYLSYPLQTAPTSATPSKPLLPQ 126

Query: 224 I 222
           +
Sbjct: 127 L 127


>UniRef50_A3YG00 Cluster: Transcriptional regulator; n=2;
           Proteobacteria|Rep: Transcriptional regulator -
           Marinomonas sp. MED121
          Length = 307

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 427 VLVHDAHATESQCSPTQA*IGGLGLGQCYPPDRVLHQTPYHLVTVQDLTSQVQHSRA 257
           VL+ +A  + +Q     + + GL   +  P  R +H TP+H  +V  L  Q + SR+
Sbjct: 171 VLMIEAFRSSTQADTVTSLLAGLADARINPAIRAIHDTPHHPWSVTQLADQARLSRS 227


>UniRef50_A5BM32 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 1262

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 33  KCIWRRKLSFRMLSSWYCRNLRRCRSSICK*ATER 137
           K +W   +S+R + S  C NL RC  +I K  T+R
Sbjct: 128 KALWDEYISYRPIPSCRCGNLNRCSCNILKDLTDR 162


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,754,541
Number of Sequences: 1657284
Number of extensions: 15380747
Number of successful extensions: 32227
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32210
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)