Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0175
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0443 - 24379756-24379794,24379896-24379967,24380054-243801...    33   0.33 
08_02_0191 + 14041201-14043894,14044354-14044632                       30   2.4  
06_01_0410 + 2928382-2930973                                           29   3.1  
03_04_0214 + 18688480-18688832,18688956-18688999,18689039-186891...    29   4.1  
03_03_0060 - 14157352-14158851                                         28   9.5  

>03_05_0443 -
           24379756-24379794,24379896-24379967,24380054-24380161,
           24380264-24380373,24381500-24381605
          Length = 144

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = -2

Query: 419 P*CACNRIPMLTNTSLNRRARARTVLPTRSGPSSNALPPRNRSRFNVPGTTFTGRIRTDR 240
           P   C     +TNT +N  A   + +PT SG S NA  P + S +N P  T     R   
Sbjct: 58  PSVKCAICHYITNTGMNTVAPTPSPMPTSSGSSYNA--PPSGSSYNAPPPTSAPTSRPQN 115

Query: 239 PTI 231
            T+
Sbjct: 116 VTV 118


>08_02_0191 + 14041201-14043894,14044354-14044632
          Length = 990

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +1

Query: 64  ECCHLGIVVI*DDAEVRYANERRRELNKLDRTGTSVTIKILLPVGCGDSIPS-*MAGIVG 240
           EC   G   + DD     AN+ R EL ++D   TSV +    P    ++IPS  + G + 
Sbjct: 292 ECSMKGKNQLVDDDGKDMANDERTELIEVDTKFTSVNLCFRDPWLALNAIPSRILIGCLS 351

Query: 241 LSVLIRPVNVVPGTLNL 291
             + +  +++VP TL +
Sbjct: 352 HDLGVNSLSLVPSTLEV 368


>06_01_0410 + 2928382-2930973
          Length = 863

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +1

Query: 64  ECCHLGIVVI*DDAEVRYANERRRELNKLDRTGTSVTIKILLPVGCGDSIPS-*MAGIVG 240
           EC   G   + DD     AN+ R EL ++D   TSV +    P    ++IPS  + G + 
Sbjct: 293 ECSMKGKNQLVDDDGKDMANDERTELIEVDTKFTSVNLCFRDPWLALNAIPSRILIGCLS 352

Query: 241 LSVLIRPVNVVPGTLNL 291
             + +  +++VP TL +
Sbjct: 353 HDLGVNNLSLVPSTLEV 369


>03_04_0214 +
           18688480-18688832,18688956-18688999,18689039-18689101,
           18689883-18689956,18691526-18692017
          Length = 341

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 245 DRPTIPAI*DGILSPHPTGSNIFIVTEVPV 156
           DRP +P I    +S +PT   + I++EVP+
Sbjct: 200 DRPLVPTIKTFQISTNPTTEGLGIISEVPI 229


>03_03_0060 - 14157352-14158851
          Length = 499

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 383 NTSLNRRARARTVLPTRS-GPSSNALPPRNRSR 288
           N + N+R R  T   T   GP +  LPPR  SR
Sbjct: 7   NNNSNKRQRKSTTTTTSVVGPDNGGLPPRRSSR 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,586,506
Number of Sequences: 37544
Number of extensions: 428402
Number of successful extensions: 865
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)