Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0175
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)          32   0.60 
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)              28   7.3  
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)                 28   7.3  

>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
          Length = 1571

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -2

Query: 398 IPMLTNTSLNRRARARTVLPTRSGPSSNALPPRNRSRFNVPGTTFTGRIRTDRPTI 231
           IP +T TS  +  + +TVL   SGP +        +   VP T   G  RTDRPT+
Sbjct: 763 IPTVTTTSAPQPTKGKTVLGDPSGPLAGI------NATEVPSTIIGGN-RTDRPTV 811


>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1446

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 5/112 (4%)
 Frame = -2

Query: 344  LPTRSGP-SSNALPPRNRSRFNVPGTTFTGRIRTDRPTIPAI*DGILSPHPTGSNIFIVT 168
            LP  S P SS+AL        N+P TT+T    + +P+ P       SPHP+  +  + T
Sbjct: 1026 LPHPSSPHSSSALYSSPSRTSNLPYTTYTNTAISSQPSPPY---SSTSPHPSHFSTRVST 1082

Query: 167  EVPVXXXXXXXXXXXFAYR----TSASSQITTIPR*QHSEA*LPPPNALHPY 24
                              +    T  SS IT +    H     P P+ LHP+
Sbjct: 1083 NGSSPSCQYTYADRSTQEKPLPPTRTSSYITAVTSAAHPPG--PHPSRLHPF 1132


>SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
 Frame = -2

Query: 398 IPMLTNTSLNRRARARTVLPTRS--GPSSNALP-----------PRNRSRFNVPGTTFTG 258
           IPM T T++  R + R +  T S  G S N  P            RN+ R+    T+ TG
Sbjct: 756 IPMATRTAVESRNQRRCIHMTTSSTGKSRNRRPYIPMATRTAVESRNQRRYIHMTTSTTG 815

Query: 257 RIRTDRPTIP 228
           + R  RP IP
Sbjct: 816 KSRNRRPYIP 825


>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
          Length = 951

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 356 ARTVLPTRSGPSSNALPPRN 297
           ART+ PT  GP +  LPP N
Sbjct: 829 ARTLPPTNDGPHARTLPPTN 848



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 386 TNTSLNRRARARTVLPTRSGPSSNALPPRN 297
           T +  N    A+T+ PT  GP +  LPP N
Sbjct: 867 TLSRTNDGPHAKTLSPTNDGPHAKTLPPTN 896


>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
          Length = 884

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 395 PMLTNTSLNRRARARTVLPTRSGPSSNALPPRNRSRFNVPGTT 267
           P + ++S   +A   T  PT +G S  + P  N++ +N+PG T
Sbjct: 331 PSMPSSSAIPQASQGTA-PTTTGASGASSPAPNQTAYNIPGMT 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,750,353
Number of Sequences: 59808
Number of extensions: 492880
Number of successful extensions: 967
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)