Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0175
         (777 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.             31   6.1  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    31   6.1  
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro...    31   6.1  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     31   6.1  

>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
          Length = 1791

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 386  TNTSLNRRARART-VLPTRSGPSSNALPPRNRSRFNVPGTTFTGRIRTDRPTIPAI 222
            T  ++ RR+R+RT +LP +   S + L  R RSR   P T    R  T  P  PAI
Sbjct: 1054 TPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSP--PAI 1107


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
          Length = 2752

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 386  TNTSLNRRARART-VLPTRSGPSSNALPPRNRSRFNVPGTTFTGRIRTDRPTIPAI 222
            T  ++ RR+R+RT +LP +   S + L  R RSR   P T    R  T  P  PAI
Sbjct: 2022 TPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSP--PAI 2075


>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
           protein.
          Length = 1275

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 386 TNTSLNRRARART-VLPTRSGPSSNALPPRNRSRFNVPGTTFTGRIRTDRPTIPAI 222
           T  ++ RR+R+RT +LP +   S + L  R RSR   P T    R  T  P  PAI
Sbjct: 545 TPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSP--PAI 598


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 386  TNTSLNRRARART-VLPTRSGPSSNALPPRNRSRFNVPGTTFTGRIRTDRPTIPAI 222
            T  ++ RR+R+RT +LP +   S + L  R RSR   P T    R  T  P  PAI
Sbjct: 2070 TPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSP--PAI 2123


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,886,900
Number of Sequences: 237096
Number of extensions: 2328190
Number of successful extensions: 3865
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3863
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)