Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0175
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    30   1.6  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    30   1.6  
Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical p...    28   6.5  
Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical p...    28   8.6  

>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -2

Query: 461 GRSLMYESWLICPCP*CACNRIPMLTNTSLNRRARARTVLPTRSGPSSNALPPRNRSRFN 282
           G S+  E W ICP P        M+ N  +  ++  +  LP R+      LPP+     +
Sbjct: 546 GGSVCREGWCICPDP-------SMIVNRGICIQSGPKPTLPPRTPIPQVPLPPQLPISVH 598

Query: 281 VPGTTFT 261
           VP  T T
Sbjct: 599 VPQVTIT 605


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -2

Query: 461 GRSLMYESWLICPCP*CACNRIPMLTNTSLNRRARARTVLPTRSGPSSNALPPRNRSRFN 282
           G S+  E W ICP P        M+ N  +  ++  +  LP R+      LPP+     +
Sbjct: 643 GGSVCREGWCICPDP-------SMIVNRGICIQSGPKPTLPPRTPIPQVPLPPQLPISVH 695

Query: 281 VPGTTFT 261
           VP  T T
Sbjct: 696 VPQVTIT 702


>Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical
           protein T25E12.10 protein.
          Length = 382

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 243 VCSYTARECCTWDVKS*T 296
           VC+ TAR  C WDVKS T
Sbjct: 187 VCNQTARTSCIWDVKSGT 204


>U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical
           protein F23F12.8 protein.
          Length = 980

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 335 RSGPSSNAL-PPRNRSRFNVPGTTFTGRIRTDRP 237
           RSG S   L   RNR R N P  T  GR+RT  P
Sbjct: 191 RSGESRTQLIRNRNRERGNAPAFTRPGRVRTTTP 224


>U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical
           protein R09F10.1 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 711 KKPSKNL--RVNVPTS*VVKNSFRPSGLTEASYILT 610
           +KP K +  R+ +P   ++KN   P+G ++ SY+LT
Sbjct: 11  QKPCKAVDDRIEIPVETLIKNRKYPNGNSDLSYVLT 46


>Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical
           protein C01G10.4 protein.
          Length = 72

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 258 PYKNRQTNNSGHLRWYTITASNRQ*YLYRNGG 163
           P  N   NN+G+  +Y    +N   Y Y N G
Sbjct: 27  PNNNNYNNNNGYTTYYYYPNNNNNGYYYNNNG 58


>Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical
           protein C01G10.17 protein.
          Length = 75

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 249 NRQTNNSGHLRWYTITASNRQ*YLYRNGGAG 157
           N   NN+G+  +Y    +N   Y Y NG +G
Sbjct: 29  NNYNNNNGYTTYYYYPNNNNNGYYYNNGCSG 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,474,523
Number of Sequences: 27780
Number of extensions: 362625
Number of successful extensions: 742
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)