Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0173
         (555 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.58 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   3.1  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   5.5  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 150 WINEIPTVPI 179
           W+NEIPT+P+
Sbjct: 321 WLNEIPTMPV 330


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 394 YYRPRTASAQP 362
           YYRPRT+  +P
Sbjct: 232 YYRPRTSRTEP 242


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 18  NVIYAQCSECQREEIQASAGKRRE*L*LS*GSQMPRHLISDAHEWINEI 164
           + ++ +CS+C   E Q +  K+           + RHLI    +W NE+
Sbjct: 69  DALHTECSKCS--ETQKNGSKK-----------IMRHLIDHKRDWWNEL 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,009
Number of Sequences: 336
Number of extensions: 2642
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)