Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0173
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    28   0.80 
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   5.7  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    25   5.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   9.9  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   9.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   9.9  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   9.9  

>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 531 TDVPPQSNPRLAVSSNRITREF*TAT 454
           T VPP+ +P L+VS NR+ +   T T
Sbjct: 94  TSVPPEQDPSLSVSFNRLPKSASTKT 119


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 114 GYLKRVIVTPAVYPRLLEFLHVDIQST 34
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 512 QIPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRPTEXPMN 348
           Q  A   P   S GSF R+    P +    L+ N       ST+    PT+ P+N
Sbjct: 166 QTSASSRPPVLSNGSFPRQTNTAPLNPPVHLKDNIRNSATPSTSQADIPTQYPIN 220


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 129 LISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTXXXXXXXGIVRRHERCSISGRS 308
           L S AH+ ++++P VP  +   P P+  + E   G            VR H+    +G  
Sbjct: 749 LASLAHDDLDDLPAVPRIFSPPPLPKTPSGE--FGDNEFMFPKKSNRVRGHQSRPSTGSQ 806

Query: 309 FRAIV 323
            R +V
Sbjct: 807 LRNVV 811


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 120 PRHLISDAHEWINEIPTVPIYYLAKPQP 203
           P  LI+D  + I ++PT PIY +A   P
Sbjct: 303 PASLINDLLD-IKKVPTKPIYDMASEYP 329


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 505 PPGSVLEPDHAGVLNGDERFRHVTTLHAWNE 413
           P   ++E D A          H+T LH WNE
Sbjct: 876 PKDKIMEADKARANFTQPGGDHLTLLHIWNE 906


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 360 VXNESMKVVVFQRRSRETISHLCYTSHVSLQCQTRASSTGSSFPADSPKP 211
           V NES KVVV  ++ +  IS +  T+  S+      SS      A   KP
Sbjct: 623 VANESTKVVVDNQQPQPKISTVSDTAVPSMSFANNISSRSVISAATDSKP 672


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 156 NEIPTVPIYYLAKPQP 203
           NE+PTVPI Y  KP P
Sbjct: 274 NEVPTVPIRY--KPPP 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,781
Number of Sequences: 5004
Number of extensions: 45105
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)