Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0173
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 32 0.27
01_06_0456 + 29521282-29522064 32 0.35
01_01_0613 - 4571689-4572348 31 0.47
05_05_0272 - 23738514-23738817,23739382-23740748 31 0.62
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 1.4
11_01_0469 + 3638493-3641166,3641286-3641653 29 3.3
06_03_1448 + 30235336-30236763 29 3.3
06_03_1443 + 30182018-30183445 29 3.3
06_03_1440 + 30166515-30167942 29 3.3
06_03_1437 + 30151030-30152457 29 3.3
06_03_1429 + 30100834-30102261 29 3.3
06_03_1425 + 30084383-30085810 29 3.3
06_03_1420 - 30053713-30055140 29 3.3
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 3.3
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 5.8
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 28 5.8
04_01_0605 + 7944514-7944637,7944930-7945198,7945467-7945559,794... 28 5.8
02_05_0971 - 33188816-33188965,33190406-33190705,33191500-331915... 28 5.8
05_04_0419 + 21103418-21103597,21103768-21103931,21104420-21104846 27 7.6
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +3
Query: 108 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTXXXXXXXGIVRRHER 287
G+ PR + D EW N PT+ ++ + +PRE Q+ K I+ E
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIF------ILNSDES 1446
Query: 288 CSISGR 305
CS+ G+
Sbjct: 1447 CSLKGK 1452
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -2
Query: 503 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 381
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>01_01_0613 - 4571689-4572348
Length = 219
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -1
Query: 555 LGHLRYSLTDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 385
LGH YSL PP S P + N ++ ++S SA + +G + R+ +++D
Sbjct: 53 LGHSVYSLPLPPPPSQPVVVAGGN--NDQYGVSSSSSAAATTSRIGFRTRSEVEVLD 107
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 31.1 bits (67), Expect = 0.62
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 552 GHLRYS-LTDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKH 409
G RY+ +TDVPP N L V N IT EF T + +P ++ + H
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRTFIEIIFENPEKSMDSVH 446
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 132 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 31
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>11_01_0469 + 3638493-3641166,3641286-3641653
Length = 1013
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -2
Query: 167 GNLVNPFMRVTN*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGINHIA 15
GN+ N F ++ N T ++ + + L F + LN TL +LG+NH++
Sbjct: 204 GNIPNEFAKLPNLQTLYVGSNQ---LSGSFPQVLLNLSTLINLSLGLNHLS 251
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 508 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 371
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 508 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 371
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 508 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 371
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 508 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 371
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 508 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 371
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 508 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 371
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 508 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 371
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 436 TTLHAWNETPCARRYY 389
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 400 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGI*LG 519
G+T+ R R A W RG A RR +LP G +AG LG
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLG 77
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 530 QMYRPSQIPAWQCPRTGSRGSFKRRRAFPPRHHSA 426
QM S+I P S G ++RR P RHH A
Sbjct: 4 QMQSRSRIRGRDPPPASSGGRYRRRSPSPRRHHRA 38
>04_01_0605 +
7944514-7944637,7944930-7945198,7945467-7945559,
7945824-7945958,7946448-7946538,7947837-7947929,
7948418-7948578,7948589-7948675
Length = 350
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 264 QTRASSTGSSFPADSPKPVPLAVVSLDSR*GQW 166
Q R+S+T D PKP PL V+ L S QW
Sbjct: 290 QNRSSTTLVKVTCDGPKPSPLTVLGLVS--DQW 320
>02_05_0971 -
33188816-33188965,33190406-33190705,33191500-33191562,
33191637-33191710,33191880-33191973,33193396-33193482,
33193753-33193887
Length = 300
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 294 CYTSHVSLQCQTRASSTGSSFPADSPKPV 208
CY H Q QTR SST S P PV
Sbjct: 182 CY--HTQAQSQTRTSSTSPSMSPSPPPPV 208
>05_04_0419 + 21103418-21103597,21103768-21103931,21104420-21104846
Length = 256
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 200 AKGTGLGESAGKEDPVELAL 259
A G+G G SAG+E+P+ +A+
Sbjct: 8 AAGSGAGTSAGREEPIVVAI 27
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,334,192
Number of Sequences: 37544
Number of extensions: 353757
Number of successful extensions: 1110
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -