Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0173
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     31   0.74 
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    31   0.74 
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    31   0.74 
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 354 NESMKVVVFQRRSRETISHLCYTSHVSLQCQTRAS-----STGSSFPADSPKPVPL 202
           +E+     F++ S+   S L  T+    Q Q RAS     S GSS P   P PVPL
Sbjct: 152 DENQNAANFRKTSQHASSLLSSTAAALTQQQRRASQSSSTSAGSSIPHAPPPPVPL 207


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 354 NESMKVVVFQRRSRETISHLCYTSHVSLQCQTRAS-----STGSSFPADSPKPVPL 202
           +E+     F++ S+   S L  T+    Q Q RAS     S GSS P   P PVPL
Sbjct: 138 DENQNAANFRKTSQHASSLLSSTAAALTQQQRRASQSSSTSAGSSIPHAPPPPVPL 193


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 354 NESMKVVVFQRRSRETISHLCYTSHVSLQCQTRAS-----STGSSFPADSPKPVPL 202
           +E+     F++ S+   S L  T+    Q Q RAS     S GSS P   P PVPL
Sbjct: 138 DENQNAANFRKTSQHASSLLSSTAAALTQQQRRASQSSSTSAGSSIPHAPPPPVPL 193


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 531 TDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPP-NRVX 355
           T   P+S+ R A  + R+   + T T  +A S      T  +AP  I DR   P  NR+ 
Sbjct: 69  TTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRKAPWYIKDRTAWPTYNRIS 128

Query: 354 NE 349
            E
Sbjct: 129 AE 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,950,954
Number of Sequences: 27780
Number of extensions: 264807
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)