Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0173
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA...    33   0.097
At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA...    33   0.097
At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA...    33   0.097
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    30   1.2  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    30   1.2  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    28   3.6  
At2g25730.1 68415.m03084 expressed protein                             28   3.6  
At4g39590.1 68417.m05597 kelch repeat-containing F-box family pr...    28   4.8  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   4.8  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   4.8  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    27   6.4  

>At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 385

 Score = 33.5 bits (73), Expect = 0.097
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -1

Query: 552 GHLRYSLTDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 385
           GH    +TD PP SN RL +  NR+      AT++S  + L  L T  R    I+D
Sbjct: 6   GHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59


>At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 384

 Score = 33.5 bits (73), Expect = 0.097
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -1

Query: 552 GHLRYSLTDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 385
           GH    +TD PP SN RL +  NR+      AT++S  + L  L T  R    I+D
Sbjct: 6   GHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59


>At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 385

 Score = 33.5 bits (73), Expect = 0.097
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -1

Query: 552 GHLRYSLTDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 385
           GH    +TD PP SN RL +  NR+      AT++S  + L  L T  R    I+D
Sbjct: 6   GHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -1

Query: 378 PLPPNRVXNESMKVVVFQRRSRETISHLCYTSHVSLQCQTRASSTGSSFPADSPKP---V 208
           P  P+R        V  ++ +R+T SHL Y++ V L+ +  + S  +  PA    P   V
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE-KAGSHSGSNPAPASGSDPINRV 78

Query: 207 PLAVVSLD 184
           PLA V  D
Sbjct: 79  PLAQVVED 86


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -1

Query: 378 PLPPNRVXNESMKVVVFQRRSRETISHLCYTSHVSLQCQTRASSTGSSFPADSPKP---V 208
           P  P+R        V  ++ +R+T SHL Y++ V L+ +  + S  +  PA    P   V
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE-KAGSHSGSNPAPASGSDPINRV 78

Query: 207 PLAVVSLD 184
           PLA V  D
Sbjct: 79  PLAQVVED 86


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 426  TLGTKHRAPADIIDRAPLPPNRVXNESMKVVV 331
            T+G+ HR+ AD ++ +PLP   V + S   +V
Sbjct: 972  TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
 Frame = -1

Query: 537  SLTDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 358
            S+T +PP   PR+ VS++R+ ++     +V A S   +L    R        A   P   
Sbjct: 1626 SVTIIPPPREPRITVSASRLRQKSRAGPAVKA-SFTSSLSNFQREARRAFSWA---PRNA 1681

Query: 357  XNESMKVVVFQRRSRETISHLCYTSHVSLQCQTR-ASSTGSSFPADSPKPVP 205
             N +    V+++R     S L  +   + +  T      GSS+ AD    +P
Sbjct: 1682 ENRTTSKDVYRKRKN---SGLGASERAAWEAMTGIQEDQGSSYSADGQDRLP 1730


>At4g39590.1 68417.m05597 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 402

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 343 H*FIGYSVGRKRCAVDNI 396
           H  IGY++G   C VDNI
Sbjct: 279 HWLIGYAIGSSNCVVDNI 296


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 387 DRAPLPPNRVXNESMKVVVFQRRSRET 307
           +RAPLP   V  E++  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 438 SPLCTLGTKHRAPADIIDRAPLPPNRVXNESMKVVVFQRRSRETIS 301
           S LC LG+  R PAD I+   L   R+   +M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 108 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKK 239
           G  +P + +SD +  INE+   P   +AK   +E   +   GK+
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,404,221
Number of Sequences: 28952
Number of extensions: 255861
Number of successful extensions: 639
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)