Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0165
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   3.5  
11_06_0189 - 21039217-21039348,21039480-21039738,21039841-210400...    29   4.7  
07_03_0939 + 22758169-22758402                                         28   8.1  
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417...    28   8.1  

>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 107 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 214
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>11_06_0189 -
           21039217-21039348,21039480-21039738,21039841-21040004,
           21040371-21040533,21040615-21042137
          Length = 746

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 534 TLFRASRLSGSTVSISLPDSARLASALE---AFRHNPAD 427
           T+ R  R +GS  S  LPD   LASA +   +FR++P D
Sbjct: 60  TVGRYHRAAGSCQSDVLPDEQSLASAFDMVLSFRNHPVD 98


>07_03_0939 + 22758169-22758402
          Length = 77

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 457 GRSQPSRIRQGYAHCGARESGGSKQCDFTXRVSHS 561
           GRS   R+   +  CGA +  G++  DF  +  HS
Sbjct: 20  GRSSQKRMAHSHPPCGAGDLEGAESADFLAQGVHS 54


>03_05_0520 +
           25139314-25139364,25139580-25139711,25141594-25141731,
           25143191-25143241,25143662-25143751,25143854-25144000,
           25144108-25144218,25144307-25144375,25144777-25145517,
           25145840-25146004,25146376-25146442,25146580-25146704,
           25148714-25148983,25149065-25149199,25149316-25149497,
           25149669-25149744
          Length = 849

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 331 VVAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL*GRSQPSRI 480
           VV   I  ST   +VS    + S  RP+V TT   ++P  +  RS P  I
Sbjct: 308 VVPTTISTSTAAVSVS-AETISSPVRPIVPTTTAAVLPASVTARSAPENI 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,223,725
Number of Sequences: 37544
Number of extensions: 397963
Number of successful extensions: 1000
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)