Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0164
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 40 3e-04
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 33 0.024
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 28 0.68
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 27 1.2
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 2.1
SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase |Schizosac... 26 2.7
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 26 2.7
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 26 2.7
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 26 3.6
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 4.8
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 25 4.8
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 25 4.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 6.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 6.3
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 6.3
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 6.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 6.3
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 8.4
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 25 8.4
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 25 8.4
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 25 8.4
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.4
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 39.5 bits (88), Expect = 3e-04
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = -1
Query: 364 RTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVKKGLK 242
RT+ Y+DF+ KTVLD CGTGI SM K G K
Sbjct: 239 RTEGYRDFVYHNKHIFAGKTVLDVGCGTGILSMFCAKAGAK 279
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 33.1 bits (72), Expect = 0.024
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = -1
Query: 430 KDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVKK 251
KD Y D + ++ + + RT +Y+D ++ K VLD CGTGI SM +
Sbjct: 16 KDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLDVGCGTGILSMFCARA 75
Query: 250 GLK 242
G K
Sbjct: 76 GAK 78
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 28.3 bits (60), Expect = 0.68
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = -3
Query: 242 VVSVDASDKMLKHALKARWEKRKNPKYDDWVIEEANWETLPQDIETFLPDTQFDAVICLG 63
+V D ++ +K L + +R + YD+ +IE+ + ++ + D Q + ++ G
Sbjct: 384 LVRTDPRERSIKSMLSDNFLQRSSNNYDNEIIEKVDSANSNKNATNDIKDLQTEEIVEEG 443
Query: 62 NS 57
NS
Sbjct: 444 NS 445
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = -1
Query: 403 AKTWNKFIGDS---NQRTQNYKDFLIGLLKNNGC---KTVLDAACGTGIDSMMLVKKG 248
AKTW + G S + DF+ + + C K +LD CG GI S + + G
Sbjct: 42 AKTWWDWDGGSRLLHLMNSTRLDFMTEVFRERNCFSGKKILDIGCGGGILSESMARLG 99
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 127 VSQLASSITQSSYLGFFLFSQRALRACFN 213
V QL +S+ +S +G FL S + R CF+
Sbjct: 122 VRQLHASLEDASSVGLFLLSLASERVCFS 150
>SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 159
Score = 26.2 bits (55), Expect = 2.7
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = -3
Query: 236 SVDASDKMLKHALKARWEKRKNPKYDDWVIEEA--NWETLPQDIETFLPDTQFDAVICLG 63
++ A + ++K A++ EK + K ++ IE +WE LPQ I + +DAVI +G
Sbjct: 28 NLQAIEPLVKGAVETMIEKH-DVKLENIDIESVPGSWE-LPQGIRASIARNTYDAVIGIG 85
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 26.2 bits (55), Expect = 2.7
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 1/117 (0%)
Frame = -3
Query: 356 ELQRLLDRSLEEQRLQDCS-GRRLWYWDRLHDAGEEGFKVVSVDASDKMLKHALKARWEK 180
EL LL E+ + + G W L + K+ +VD S+K +
Sbjct: 107 ELLDLLKEDAGEKSILEIGCGAGNTIWPILKENKNSNLKIFAVDYSEKAIDVV------- 159
Query: 179 RKNPKYDDWVIEEANWETLPQDIETFLPDTQFDAVICLGNSFAHLLDEYGDQRMQKL 9
++NP YD + W+ D+ + + DA I L F+ L + Q ++ L
Sbjct: 160 KQNPLYDAKFCSASVWDLAGSDLLRSIEEASIDA-ITLIFCFSALSPDQWQQAIENL 215
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 26.2 bits (55), Expect = 2.7
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 124 SVSQLASSITQS--SYLGFFLFSQRALRACFNILSEASTDTTLNPSSPASWSL 276
S SQLA S S Y G F ++AL+ AS LNP SP+ +++
Sbjct: 525 SASQLAPSYVGSLPQYHGNPSFVEQALQDLVQPTDSASQIFPLNPQSPSQFTI 577
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.8 bits (54), Expect = 3.6
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 281 WDRLHDAGEEGFKVVSVDASDKML-KHALKARWE-KRKNPKYDDWVIEEANWETLPQDIE 108
W RL ++ + S D D+ L +H+ + + +++ + +D ++E +W+ QD+E
Sbjct: 569 WKRLPES--DYLLYPSYDLPDRNLSEHSYSSSSDDEQRISELNDRELDEIDWQAADQDVE 626
Query: 107 TFLPDTQFD 81
L D D
Sbjct: 627 NALKDLSDD 635
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.4 bits (53), Expect = 4.8
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -1
Query: 184 RRERTPNMMIG*LKKPTGRHSRKTSRRFYQIPSSTPSYVSGTRSPICWMSTETKGCRSCV 5
R++ TP + +KK RH + SR Y++P ST S + W E K R V
Sbjct: 350 RQKSTPYLSF--IKK--ARHLIQVSRDKYKLPISTEEIKPVVYSQVTWTEFEKKLLRYLV 405
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 454 LGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYK 347
+GI S G Y+D K WN F + N+ + K
Sbjct: 287 VGISSSGRAAGYSDEKKQNLWNLFAEEVNRHREIVK 322
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 224 SDKMLKHALKARWEKRKNPKYDDWVIEEANWETL 123
SD L+ ++A+W+ K+ +IE N +TL
Sbjct: 102 SDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTL 135
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 6.3
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 287 TSGVQNSLAAVVLQETDQEVFVVLRSLITISDELVPCFCRFAVSVLIFYTLGGNTQGT 460
T V +SL V + + V++ SLI + P F R + +FY L GN + T
Sbjct: 601 TERVMHSLMRPVPLDLPHDQKVMIASLIKSA---YPMFSRTNQLICLFYCLTGNEEAT 655
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 164 IWGSFSSPSEL*ERASTSCPKHQPTPL 244
I+ SFSS +L +R S+ H PT L
Sbjct: 28 IFSSFSSSQKLFQRRSSGSITHSPTAL 54
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = -1
Query: 487 YGSGPGIHSRSLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKN 320
+G G+ + G E + Y K W + IGDS+ ++ + ++G+ +N
Sbjct: 553 HGWASGLFESNDGKDEESTSEDYNFFFGMKLWGQVIGDSDM--EDRANIILGIERN 606
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/15 (66%), Positives = 14/15 (93%), Gaps = 1/15 (6%)
Frame = -3
Query: 152 VIEEA-NWETLPQDI 111
VI++A NWETLP+D+
Sbjct: 567 VIDKADNWETLPRDV 581
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 349 KDFLIGLLKNNGCKTVLDAACGTGIDSMMLVKK 251
K+F+I LK+NG T++ CG G + + +K+
Sbjct: 805 KEFMISTLKHNGYITLM---CGDGTNDVGALKQ 834
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 24.6 bits (51), Expect = 8.4
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = -3
Query: 356 ELQRLLDRSLE-EQRLQDCSGRRLWYWDRLHDAGEEGFKVVSVDASDKMLKHAL-KARWE 183
E + +RS+ E ++D + R++ D L+ + E + V + S+ + + AL KA
Sbjct: 772 ERDQFRERSMGFENTIKDLT-RKMEATDMLNVSLHESLRSVQTENSELVTEMALLKAELV 830
Query: 182 KRK-----NPK-YDDWVIEEANWETLPQDIETFLPDT 90
K++ N YD + N+ET+ DI L +T
Sbjct: 831 KKQAIIDANANIYDKLTADHTNYETVSADINQNLKET 867
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 165 FGVLSLLPASFESVLQHLVRSINRHHFKPFFTSIMESI 278
FG+ +LLP + S +HLV +N FKP ++ I
Sbjct: 131 FGLRNLLPEAVISKEKHLVYILN--SFKPILLKLVSII 166
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 170 PKYDDWVIEEANWETLPQD 114
PK DDW A W+TL D
Sbjct: 262 PKGDDWEQAVAYWKTLRSD 280
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 281 WDRLHDAGEEGFKVVSVDASDKMLKHALKARWEKRKNPKYD 159
WD + A + F+ + A + H +K E+++ PKYD
Sbjct: 120 WDTVPKAVDRIFRSQNWHARRQKQFHLMKPAEERKQLPKYD 160
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 8.4
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 82 SNWVSGRNVSMSCGSVSQLASSITQSSYLGFFLFSQRALRACFNILSEASTDTTL-NPSS 258
++W N+ S + S + S+ TQSS++ F SQ+ N L + TD L PS+
Sbjct: 94 THWARDFNILTSNFASSSVTSAPTQSSHISNFTNSQKYFA---NDLPNSLTDQPLAQPSA 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,569
Number of Sequences: 5004
Number of extensions: 50259
Number of successful extensions: 211
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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