Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0162
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    32   0.065
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   5.7  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    25   9.9  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   9.9  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   9.9  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   9.9  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    25   9.9  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   9.9  

>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 31.9 bits (69), Expect = 0.065
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 293 QMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENHRGKKTL 424
           +  +H I+ +  W+N IP    Y L   + R+++ EN+   +T+
Sbjct: 309 EFTKHWINRSLSWVNSIPVFGKYLLLSVEERQKSLENYISSETI 352


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 270 YSRRLPRLLEFLHVDIQSTGQKSHCVNT--REGHRNALF*LDSRIPLVRASSELT 112
           Y  RL R+L  L  +  ST    H  ++  R  HR A    D+R+ +VR  SELT
Sbjct: 497 YYVRLARILSQLSSEF-STSLVDHARHSFKRMIHRKAKHEYDTRLLIVRYISELT 550


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 389 RAWENHRGKKTLLSLTLVW 445
           + W+NH   +T L L L W
Sbjct: 169 KIWQNHVNSQTALPLELTW 187


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 299 PRHLISDAHEWINEIPTVPIYYLAKPQP 382
           P  LI+D  + I ++PT PIY +A   P
Sbjct: 303 PASLINDLLD-IKKVPTKPIYDMASEYP 329


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 131 VPVLS*PLNGGRTESCRSRTKRNRHDLTARKIRGRPENAGPD 6
           VP+   PL+   T+     T   RH  T  + +    N GPD
Sbjct: 211 VPIFRIPLSDYETDDMDDGTPLQRHVATLNQYQSPIFNLGPD 252


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 335 NEIPTVPIYYLAKPQP 382
           NE+PTVPI Y  KP P
Sbjct: 274 NEVPTVPIRY--KPPP 287


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 484 DRFARSSLKTTTFICFIT 537
           D+FA S L+T  F CFI+
Sbjct: 355 DQFAHSFLRTPMFDCFIS 372


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 85  HDSVRPPFNGQLRTGTDKGN 144
           HD V+  F GQ+    DKGN
Sbjct: 61  HDGVKIEFIGQIENTYDKGN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,807
Number of Sequences: 5004
Number of extensions: 46783
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)