Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0162
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    29   1.9  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    28   5.8  
08_01_1005 - 10183796-10185183,10186673-10186859                       28   5.8  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    28   5.8  
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    27   7.6  
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550...    27   7.6  
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    27   7.6  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 287  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRE 388
            G+  PR +  D  EW N  PT+   ++ + +PRE
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPRE 1426


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 93  CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 221
           C T   RS  N H   +  CL+  +H     G   NVI  +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284


>08_01_1005 - 10183796-10185183,10186673-10186859
          Length = 524

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -1

Query: 272 VTPAVYRACLNFFTLTFRALGRNHIASTPARAIAMLCFN*TVGFPLSVPVLS*PLNGG 99
           + P+VYRA    F    R  G     + P  ++   C+N T    + VP+L+  L GG
Sbjct: 404 LAPSVYRAVRAEFA---RQFGAERYPAAPPFSLLDACYNLTGHDEVKVPLLTLRLEGG 458


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 93  CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 221
           CT++ +R A  W G G    L    HC  P       V+S +CS
Sbjct: 26  CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69


>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 156 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRP 52
           LD+ IP+ R   E + E R   I+P  +   P+ P
Sbjct: 274 LDNEIPITRTKIESSSEVRDLEILPTGNAALPSSP 308


>04_01_0416 -
           5504415-5504590,5509032-5509116,5509190-5509322,
           5509426-5510312
          Length = 426

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1

Query: 467 PLMSPYNARLESSLTGSSFPDDSPKPVPLAVVSLDS 360
           PL+ P  AR  SS TGSSFP  S  P    ++ L S
Sbjct: 47  PLIHPTPARFISS-TGSSFPPYSEPPPSAPMLELGS 81


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 482 PTYATPLMSPYNARLESSLTGSSFPD 405
           P+ +TP  SPY A L ++L G + PD
Sbjct: 89  PSGSTPASSPYCALLRAALFGPTTPD 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,355
Number of Sequences: 37544
Number of extensions: 356647
Number of successful extensions: 890
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)