Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0162
(554 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U77720-1|AAC51323.1| 1214|Homo sapiens transmembrane protein Jag... 32 1.6
U73936-1|AAC52020.1| 1218|Homo sapiens Jagged 1 protein. 32 1.6
U61276-1|AAB39007.1| 1218|Homo sapiens transmembrane protein Jag... 32 1.6
BC126207-1|AAI26208.1| 1218|Homo sapiens jagged 1 (Alagille synd... 32 1.6
BC126205-1|AAI26206.1| 1218|Homo sapiens jagged 1 (Alagille synd... 32 1.6
BC098393-1|AAH98393.1| 1218|Homo sapiens jagged 1 (Alagille synd... 32 1.6
AL035456-3|CAC07198.1| 1218|Homo sapiens jagged 1 (Alagille synd... 32 1.6
AF028593-1|AAB84053.1| 1218|Homo sapiens transmembrane protein J... 32 1.6
AF003837-1|AAC51731.1| 1218|Homo sapiens Jagged1 protein. 32 1.6
X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for ... 29 8.3
M14058-1|AAA51851.1| 705|Homo sapiens C1R protein. 29 8.3
BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1,... 29 8.3
AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of compl... 29 8.3
>U77720-1|AAC51323.1| 1214|Homo sapiens transmembrane protein Jagged
protein.
Length = 1214
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAVNGG 266
+C T + +QN H G L+ +CD G ++ S+C +A+ NGG
Sbjct: 650 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 705
Query: 267 SNYDSLKVAKCL 302
+ YD KC+
Sbjct: 706 TCYDEGDAFKCM 717
>U73936-1|AAC52020.1| 1218|Homo sapiens Jagged 1 protein.
Length = 1218
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAVNGG 266
+C T + +QN H G L+ +CD G ++ S+C +A+ NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718
Query: 267 SNYDSLKVAKCL 302
+ YD KC+
Sbjct: 719 TCYDEGDAFKCM 730
>U61276-1|AAB39007.1| 1218|Homo sapiens transmembrane protein Jagged
1 protein.
Length = 1218
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAVNGG 266
+C T + +QN H G L+ +CD G ++ S+C +A+ NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718
Query: 267 SNYDSLKVAKCL 302
+ YD KC+
Sbjct: 719 TCYDEGDAFKCM 730
>BC126207-1|AAI26208.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAVNGG 266
+C T + +QN H G L+ +CD G ++ S+C +A+ NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718
Query: 267 SNYDSLKVAKCL 302
+ YD KC+
Sbjct: 719 TCYDEGDAFKCM 730
>BC126205-1|AAI26206.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAVNGG 266
+C T + +QN H G L+ +CD G ++ S+C +A+ NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718
Query: 267 SNYDSLKVAKCL 302
+ YD KC+
Sbjct: 719 TCYDEGDAFKCM 730
>BC098393-1|AAH98393.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAVNGG 266
+C T + +QN H G L+ +CD G ++ S+C +A+ NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718
Query: 267 SNYDSLKVAKCL 302
+ YD KC+
Sbjct: 719 TCYDEGDAFKCM 730
>AL035456-3|CAC07198.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAVNGG 266
+C T + +QN H G L+ +CD G ++ S+C +A+ NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718
Query: 267 SNYDSLKVAKCL 302
+ YD KC+
Sbjct: 719 TCYDEGDAFKCM 730
>AF028593-1|AAB84053.1| 1218|Homo sapiens transmembrane protein
Jagged 1 protein.
Length = 1218
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAVNGG 266
+C T + +QN H G L+ +CD G ++ S+C +A+ NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718
Query: 267 SNYDSLKVAKCL 302
+ YD KC+
Sbjct: 719 TCYDEGDAFKCM 730
>AF003837-1|AAC51731.1| 1218|Homo sapiens Jagged1 protein.
Length = 1218
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 FCTTAVQRSAQN-WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAVNGG 266
+C T + +QN H G L+ +CD G ++ S+C +A+ NGG
Sbjct: 663 YCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCD----EATCNNGG 718
Query: 267 SNYDSLKVAKCL 302
+ YD KC+
Sbjct: 719 TCYDEGDAFKCM 730
>X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for
complement component C1r. ).
Length = 705
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 331 D*RDSHCPYLLSSETTAKGTGLGESSGKEDPVKLDSS 441
D + HCPY + A G +GE GK+ P LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>M14058-1|AAA51851.1| 705|Homo sapiens C1R protein.
Length = 705
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 331 D*RDSHCPYLLSSETTAKGTGLGESSGKEDPVKLDSS 441
D + HCPY + A G +GE GK+ P LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1, r
subcomponent protein.
Length = 705
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 331 D*RDSHCPYLLSSETTAKGTGLGESSGKEDPVKLDSS 441
D + HCPY + A G +GE GK+ P LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of
complement component 1 protein.
Length = 705
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 331 D*RDSHCPYLLSSETTAKGTGLGESSGKEDPVKLDSS 441
D + HCPY + A G +GE GK+ P LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,069,228
Number of Sequences: 237096
Number of extensions: 1844840
Number of successful extensions: 3658
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3657
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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