Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0162
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.2  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.2  
Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical...    27   9.1  
AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 126 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 224
           W+  G   C+ + K CDG + C       QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 126 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 224
           W+  G   C+ + K CDG + C       QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299


>Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical
           protein JC8.6b protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 491 KRSPTYATPLMSPYNARLESSLTGS-SFPDDSPKPVPLAVVSLDSR*GQWESR 336
           +R P  +TP  S Y  R  S+L+GS S  D  P  +P  V  +    G  E R
Sbjct: 89  QRKPGPSTPGSSQYTVRNLSNLSGSPSMYDRQPASLPRTVQPMGLEMGNSEQR 141


>Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical
           protein Y57G11C.6 protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 497 RAKRSPTYATPLMSPYNARLESSLTGSSFPDDSPKPVPLAV 375
           + KR    ATP +SP +  + S     +  DD P P+  +V
Sbjct: 70  KPKRDSKAATPALSPGSREMLSDHKKQTVEDDPPLPIATSV 110


>AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical
           protein F41E6.14 protein.
          Length = 656

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 201 VISAQCSECQREEIQASAVNGGSNY 275
           +++A CS CQ  +IQ +  NG   +
Sbjct: 587 LLNANCSNCQFNDIQKALTNGSDKF 611


>AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3b protein.
          Length = 525

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 52  RSCRFRFVRDRHDSVRPPFNGQLRTGTDKGN 144
           ++ R +F +  H  + PP  G++R   D GN
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGN 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,090,822
Number of Sequences: 27780
Number of extensions: 274709
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)