Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0162
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   0.90 
At5g04440.1 68418.m00441 expressed protein                             29   2.8  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    28   3.6  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    28   4.8  
At1g26500.1 68414.m03230 pentatricopeptide (PPR) repeat-containi...    27   8.4  

>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 9   RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 125
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At5g04440.1 68418.m00441 expressed protein
          Length = 255

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 458 SPYNARLESSLTGSSFPDDSPKPVPLAVVSLDS 360
           +P N  L  ++T SS  D+SPKP  LA  S  S
Sbjct: 23  NPRNPALSFTITSSSSFDESPKPSSLATSSSTS 55


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 34  RIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 126
           R++L+      R+  D HD +  PFNG   T
Sbjct: 192 RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 287 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENHRGKK 418
           G  +P + +SD +  INE+   P   +AK   +E   + + GK+
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112


>At1g26500.1 68414.m03230 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 505

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -1

Query: 347 WESR*SIHARH*LDDEAFGYLKRVIVTPAVYRACLNFFTLTFRALGRNHIASTPARAIAM 168
           WE    I  R  ++D+ F  + + + +    + C+N+F L     G  +   T  R +  
Sbjct: 132 WELAQEIGKRGLVNDKTFRIVLKTLASARELKKCVNYFHL-MNGFGYLYNVETMNRGVET 190

Query: 167 LC 162
           LC
Sbjct: 191 LC 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,609,630
Number of Sequences: 28952
Number of extensions: 263447
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)