Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0158
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    27   4.0  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    27   4.0  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    26   5.2  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.2  
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    26   5.2  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   5.2  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    26   5.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.2  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +3

Query: 474 PYEPTPKESEPLSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTF 653
           PY  TP  S PL+    TT+ SV ++  P    TS  LT ++  + +++    +P+  T 
Sbjct: 434 PYTSTPVTSTPLATTNCTTSTSVPYTSTPV---TSTPLTTTNCTTSTSIPYTSTPVTSTP 490

Query: 654 LT 659
           LT
Sbjct: 491 LT 492



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 474 PYEPTPKESEPLSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTF 653
           PY  TP  S PL+    TT+ S+ ++  P    TS  LT ++  + +++    +P+  + 
Sbjct: 457 PYTSTPVTSTPLTTTNCTTSTSIPYTSTPV---TSTPLTTTNCTTSTSVPYTSTPVTSSN 513

Query: 654 LTI 662
            TI
Sbjct: 514 YTI 516


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 621 KENYSPIYLTFLTIHQIKRKYNA-----LIRKSKRTLTITVYNSRISCDXV 758
           +E  +  Y     I Q K KYNA     ++R S R +T  + +SR++ D V
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 621 KENYSPIYLTFLTIHQIKRKYNA-----LIRKSKRTLTITVYNSRISCDXV 758
           +E  +  Y     I Q K KYNA     ++R S R +T  + +SR++ D V
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = -3

Query: 464 YKQLEGESIVCTLRQHQPRRHSVR------GVEHVSRNLSLVQELVDFGHR 330
           +K L G       R+   RRH V       G+  ++RN S+ + L+D  +R
Sbjct: 261 HKVLHGVMFDLAEREGTRRRHQVDTIVEGVGINRMTRNFSIAEPLIDMAYR 311


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -1

Query: 520 NNRLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 371
           NN  N S+S   G+Y   N NS   N  +    S SL+G+ S  LN S G
Sbjct: 563 NNNNNNSNS---GNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 103 HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNW 225
           H+    +ID  S   T ++ K  L   YDEN +PF    +W
Sbjct: 58  HEDMKYSIDFDSKSETASLQK--LDVLYDENFYPFESTKDW 96


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 8/43 (18%)
 Frame = +1

Query: 76  YKVRQPRLNHKP--FTVTIDIKSDVATNAV---VKM---FLGP 180
           Y+V++PRLN +P  +T   ++++ +A+N V   VK+   FLGP
Sbjct: 554 YEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGP 596


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 497 VRAIKSVVPDNKPFGYPFDRPVLP 568
           +  +KS VPD  P G+P D P+ P
Sbjct: 18  LEGLKSSVPDASPKGHP-DSPIFP 40


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 12  STSMPSTLSTSVKKNSRALSRLQGPSTTS 98
           STS PS++S+S+  +S  LS    PST+S
Sbjct: 607 STSSPSSISSSISSSSTILSS-PTPSTSS 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,256
Number of Sequences: 5004
Number of extensions: 63863
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)