Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0158
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 35 0.083
02_05_0372 + 28370589-28371857 31 0.77
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 29 4.1
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678... 29 5.4
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856 29 5.4
03_02_0243 - 6744164-6744415,6744518-6745135 29 5.4
06_01_0093 - 776567-777335,777449-777747 28 7.2
05_01_0062 + 440239-440325,441107-441183,441416-441643,441953-44... 28 9.5
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 34.7 bits (76), Expect = 0.083
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 520 NNRLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 359
+N+ D +G G+YG N +V + +SLE I E+LN+ + F W
Sbjct: 17 DNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70
>02_05_0372 + 28370589-28371857
Length = 422
Score = 31.5 bits (68), Expect = 0.77
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 432 TYDGFPFQLFVFVYPYEPTPKESEPLSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSW 611
TYD + ++FVY P +PLS T NH++ I+ +L ++ + SS S
Sbjct: 28 TYDRRSIEEWLFVYGRTTCPATMQPLSNFDLTPNHTLKRVISS-WLDRGSSSSSSSSPST 86
Query: 612 STMKENYSPIY 644
ST+ SPI+
Sbjct: 87 STLS---SPIH 94
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 229 NFYELDWFVKRLTLASLR*RVHLLTLHSSKKTLYRWPKSTS 351
+F L F K L L HLL LHS+K L + P T+
Sbjct: 762 SFQFLHIFKKLLILMEFTANSHLLVLHSNKNDLMKHPSKTN 802
>09_06_0134 +
21065104-21065965,21066732-21066961,21067618-21067841,
21067929-21068781
Length = 722
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 476 RIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQEL 348
+I YK+ E + I L +H+P + + + +EH+S ++ L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640
>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
Length = 1002
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = -1
Query: 532 FVVRNNRLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPWSK 353
F + N L+G L + S NS +GNPS P G +L V + +++ G P S
Sbjct: 637 FNISFNNLSGPLPLNMHSLA---CNSIQGNPSLQPCGLSTLANTVMKARSLAEGDVPPSD 693
Query: 352 SL*ISAIGKESSLKNA 305
S + + G S ++ A
Sbjct: 694 SATVDSGGGFSKIEIA 709
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 162 DDGVSGNIRFNIDCHSERLVV 100
D VSG+ RF++ C ERLVV
Sbjct: 87 DVRVSGSARFDVQCRGERLVV 107
>06_01_0093 - 776567-777335,777449-777747
Length = 355
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +1
Query: 157 VVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVKRLTLASLR*RVHLLTLHSSKKTLYRW 336
VV +F G + PFS + +E +F LT HLL S++ +L+ W
Sbjct: 105 VVDVFTGAEVSPPRLPFSKD------HEEIYFCGTLTAPITSPNSHLLI--SNRSSLFDW 156
Query: 337 PKSTSSWTK 363
P + SW++
Sbjct: 157 PVGSDSWSE 165
>05_01_0062 +
440239-440325,441107-441183,441416-441643,441953-442176,
442250-442398,443102-443279,443348-443428,443523-443669,
443759-444483
Length = 631
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 613 DQDLLEEHVRLFEVLRKNGAIEWITEWFVVRNNRLN 506
D + L VRL + L+ I++ W +NN +N
Sbjct: 83 DLERLRSEVRLLKTLKHKNIIKFYNSWLDKKNNNIN 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,407,689
Number of Sequences: 37544
Number of extensions: 376377
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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