Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0158
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       31   1.4  
SB_57955| Best HMM Match : Ribosomal_L41 (HMM E-Value=5)               30   2.4  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           29   4.2  
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               29   5.5  
SB_22694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/65 (24%), Positives = 36/65 (55%)
 Frame = +3

Query: 477 YEPTPKESEPLSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFL 656
           Y    K    LS  + T +  ++++++  +L+ S  L  +  ++ ST+++NYS +   +L
Sbjct: 141 YSTLSKNYLTLSKNYLTLSIKLLNTLSKNYLTLSIKLLNTLSKNSSTLRKNYSTLSRNYL 200

Query: 657 TIHQI 671
           T+ +I
Sbjct: 201 TLRRI 205



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/80 (26%), Positives = 42/80 (52%)
 Frame = +3

Query: 507 LSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRKYN 686
           LS  + T +  V+++++  + + S N    S +  +T+ +NYS +   +LT   + + Y+
Sbjct: 72  LSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYS 128

Query: 687 ALIRKSKRTLTITVYNSRIS 746
            L   SK  LT++   S +S
Sbjct: 129 TL---SKNYLTLSKNYSTLS 145


>SB_57955| Best HMM Match : Ribosomal_L41 (HMM E-Value=5)
          Length = 404

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +3

Query: 510 SLLFRTTNH----SVIHSIAPFFLSTSNNLTCS--SRRSWSTMKENYSPIYLTFLTIH 665
           SLL+R +NH    S+ + +    +S+S  +TCS  +   W   +    P+Y  F+  H
Sbjct: 259 SLLYRVSNHADYVSIAYRLIRAMMSSSLGVTCSPITWTIWLACRTREMPVYTAFVMQH 316


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 497 VRAIKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGEL 631
           V A+K+V  DN   G   +  +L QYF+  +M FK +   HE +L
Sbjct: 305 VAALKAVDADNSVIGTGSNHILLQQYFQHSDMTFKAL---HEQQL 346


>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 151 NAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVKRLTLASL 279
           N  V ++  PK  ++  P S+ D WM+ +E   FV++L + ++
Sbjct: 248 NESVLVWRAPKSSQDALPVSITDRWMSQHE---FVEKLNMQAV 287


>SB_22694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 616 VDQDLLEEHVRLFEVLRKNGAIEWITEWFVVRNNR 512
           + Q LL+ +    E   K G  EW+TEW ++ N R
Sbjct: 77  LQQLLLQFYAVNKEKKTKKGPKEWLTEWVILFNRR 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,958,322
Number of Sequences: 59808
Number of extensions: 457854
Number of successful extensions: 1108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)