Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0156
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    29   0.89 
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    27   2.7  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   8.3  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    25   8.3  

>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 348 ILIHGCIDLLFGNLKILFYIILNSLCEN 265
           + + G  + + GNL  +F II+N LC+N
Sbjct: 368 VAVEGSSESVAGNLPNIFPIIINGLCDN 395


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 688 KYYITAIVNYEVMCCAY*SRVLAGNI 611
           K+YIT + +  V+C A+ S V+AG++
Sbjct: 100 KWYITIVNSLLVVCSAFGSSVIAGDL 125


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 300 LFYIILNSLCENAGILLFNIQHNFIVF 220
           ++Y+   S+CEN  I+ F +Q   +++
Sbjct: 856 IYYLAQFSVCENQSIMTFRLQPFHVIY 882


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 553 NSAHSNNTNASFICGTIR 606
           NS H NN   SF+C  +R
Sbjct: 63  NSVHPNNCKGSFLCPMLR 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,618
Number of Sequences: 5004
Number of extensions: 53848
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)