Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0155
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.3  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   3.3  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    26   5.8  

>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 450 NIWIKPAFALLLHARFLSSLAGLRTPALFFDRCTAPVKLPAW 575
           +I +   F+ LL    L     LRT    +DRC  P+K   W
Sbjct: 31  SILVSLGFSSLLSVILLCIFTLLRTKFNTYDRCIPPMKKSLW 72


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 433  SPYAY*TSGSSQLLPFCSTRGF-----CPR*LALGHLRYSLTDVPPQSNSP 570
            SPYA+ T  S+ L PF STR +      P+ L L  LR+ L      ++ P
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSYMGAIPTPQLLDLRALRHGLIQPCESADKP 1261


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 106 LGECMNQMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF 243
           LGE M+ +     PL+L S+ +   S+    T   + GL  A V F
Sbjct: 370 LGEQMSALEAIQAPLLLKSLQVFKASNGGSSTGDPNAGLYTAPVSF 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,403
Number of Sequences: 5004
Number of extensions: 58451
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)