Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0155
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287...    33   0.21 
03_05_0183 - 21681673-21682524                                         29   2.6  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   3.4  
01_06_0456 + 29521282-29522064                                         29   3.4  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   4.5  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   6.0  
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310...    28   7.9  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           28   7.9  

>09_04_0593 -
           18825741-18826702,18826994-18827875,18828687-18828775,
           18828942-18829080,18829405-18829531,18829629-18829838
          Length = 802

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 154 VREEPQFRTFGSCTRRAAGGAKLP-SAGLCLNASKAEASLAESGK 23
           +++EP+FR F     R  G A  P +AG+  N + A +++++S K
Sbjct: 691 IKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNK 735


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 343 SQAFIATLPFDPSMSALPIIAKQNSPSVGFSPIKRERELGLDRRETG 203
           SQAF A L  D + +A+P++  Q  P+   +  + E E    RR TG
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPE-TETETEEEPPRQRRRTG 274


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 404 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 297
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>01_06_0456 + 29521282-29522064
          Length = 260

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
 Frame = +3

Query: 570 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRP 674
           AW+C  P +G+RG  +RRR  P    S R  R    +T+RP
Sbjct: 12  AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRP 52


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 629 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 540
           +KR  P K PA S S+ LPG + + G  SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 550 PPQSNSPPGSVLEPDHAGVLNGDE 621
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


>06_01_0437 +
           3101449-3101521,3101872-3102232,3103766-3103958,
           3104051-3104848,3104997-3105143,3106024-3106377
          Length = 641

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 673 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 551
           G+T+ R  R  A W RG  A RR +LP     G  +AG   G+
Sbjct: 36  GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 637 TTLHAWNETPCARRY 681
           TT  AW ETPCA R+
Sbjct: 560 TTTEAWVETPCAHRF 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,351,050
Number of Sequences: 37544
Number of extensions: 454543
Number of successful extensions: 1221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)