Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0148
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 46 5e-06
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 37 0.003
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 33 0.029
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 29 0.47
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 29 0.63
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 27 1.9
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 27 3.3
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 3.3
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 26 4.4
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 5.8
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 7.7
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 7.7
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 46.0 bits (104), Expect = 5e-06
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 234 RSQRFSSKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPM--SGTVNED 407
R++ S +D NGLSD ++T+ Y T V LNP+W E+ +P+ +
Sbjct: 477 RAEDLSKQDVNGLSDAYITVGFHKFGKPLYCTRVVKQDLNPIWNEYAFIPVFPDQVKAGE 536
Query: 408 SLCLEVWDFD 437
+ +E+WD D
Sbjct: 537 KISIELWDSD 546
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 36.7 bits (81), Expect = 0.003
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 258 DPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHF--SLPMSGTVNEDSLCLEVWD 431
D NG SDPFV L +R T + TLNP + E F LP T N + + WD
Sbjct: 1053 DSNGKSDPFVVFELQGEEVYRTKTHKR--TLNPTFNESFEVELPCKQTCNFVANVFD-WD 1109
Query: 432 F 434
F
Sbjct: 1110 F 1110
Score = 30.7 bits (66), Expect = 0.20
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 252 SKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSGTVNEDSLCLEVWD 431
SK P D + I MS+++ ++ T V + +NP W+E+ P+ D L+V +
Sbjct: 718 SKIPGKKCDSYARI--MSHNTKQFRTVVIASNVNPFWDEYMYAPV--ITKHDIFFLQVMN 773
Query: 432 FD 437
++
Sbjct: 774 YN 775
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 33.5 bits (73), Expect = 0.029
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +3
Query: 273 SDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSGTVNEDSLCLEVWDFDPAE 446
SDPFV + L N + + V LNPVW E + + V D L L +D+D E
Sbjct: 1098 SDPFVVLKL--NGESAFKSKVIKKNLNPVWNEEADIVVQNRV-LDVLELVCYDWDMGE 1152
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 29.5 bits (63), Expect = 0.47
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 276 DPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSGTVNEDSLCLEVWD 431
DPF + + +H T++K TLNP W E F + + ++ ++V+D
Sbjct: 30 DPFAVLTVDGEQTHT-TTAIKK-TLNPYWNETFEV---NVTDNSTIAIQVFD 76
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 29.1 bits (62), Expect = 0.63
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 174 TSYQSGG*RASGVDAECRGGRSQRFSSKDPNGLSDPFVTIYLMSNSSHRYNTSVKS 341
+SY S G D+ GGR++ +S+ + +DP T S +YN S K+
Sbjct: 109 SSYSSNKYSTGGNDSYSSGGRNEDYSTSGGSYTTDPSRTDDTASYGQSQYNQSRKT 164
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 294 YLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSGTVNED 407
Y + NSS+ ++TS + G L + PM T++ED
Sbjct: 198 YSLQNSSNIFSTSSRKGDLPKFSDYSAEKPMYDTISED 235
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 3.3
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -1
Query: 609 AIPPAGMDLSGI-LDVPISSL-SCFPVE-AVIAISLTVYGDLSRPSHQIFXXXXXXXXXX 439
AI G D I ++P+ ++ S P + +I+ + VY DLS H +
Sbjct: 298 AIDKYGSDKPDIRFELPLKNITSLLPKQDPLISTEILVYNDLS---HSLSNAESRKLCEA 354
Query: 438 XXXXXXXSKGNLHSQCQTWVKK 373
+ HSQ QTWVKK
Sbjct: 355 VGENVVVTSIREHSQLQTWVKK 376
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 515 EIAITASTGKHDNELIGTSNIPLKSIPAGGMA 610
E I GK +ELI N L ++P GG A
Sbjct: 40 ETLINELNGKDIDELIAAGNEKLATVPTGGAA 71
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 515 EIAITASTGKHDNELIGTSNIPLKSIPAGGMA 610
E I GK +ELI N L ++P+GG A
Sbjct: 40 EALIKELDGKDIDELIAAGNEKLATVPSGGAA 71
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 490 TPFTSNIFVIFSLTVSAGSKSHTSKQRESS 401
TP S V FSLT + G+KS S Q+ S+
Sbjct: 75 TPEESRKRVSFSLTSNDGAKSDRSSQKSSN 104
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 258 DPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHF 374
D N L+DPFVTI SS+ + S + + EHF
Sbjct: 308 DKNSLNDPFVTI---RKSSYEHEISEEHKKHSKKRSEHF 343
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 187 AEAKEPPELMLNV-EVVEAKDLVPKTRMVSAIHS 285
+E EP + V EV+E +D VPK V +HS
Sbjct: 256 SETTEPTAPPVTVAEVLEIEDKVPKVDEVEEVHS 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,534
Number of Sequences: 5004
Number of extensions: 58751
Number of successful extensions: 205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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