Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0142
         (599 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   2.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 462 IQNARRDVEAHLDRGDDAIGFF 527
           +Q     VEAHL +G  AIG +
Sbjct: 182 LQGISAPVEAHLRKGRGAIGAY 203


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -2

Query: 577 HRTELYPDFGAVMHVLRKKPIASSPRSKWASTSRLAF--*MRNATSKVTLFRASRLSG 410
           H +  YP   A   + RK  I  S  S W    R+ +   +  A  +  L+ A + +G
Sbjct: 252 HLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAG 309


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 469 TRDATSKPIWIAETMLSVFFLTRASRLR 552
           TR+  ++   + E  + V+F  R +RLR
Sbjct: 249 TREELAQRTKLTEARIQVWFSNRRARLR 276


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,088
Number of Sequences: 336
Number of extensions: 2701
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)