Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0142
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical p...    28   5.9  
AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical ...    28   5.9  
U40959-5|AAA81769.1|  531|Caenorhabditis elegans Udp-glucuronosy...    27   7.7  
L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.        27   7.7  
AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal embr...    27   7.7  

>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
           protein F07G11.9 protein.
          Length = 2025

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 139 KIRQALDCSPIKRERELG*TV-VRQVSFTLLMAXRCDSNTLSTRGTAVSDIWFMHSAERP 315
           ++ + LDC  ++  +E+  TV    ++F L    RC       +G     IW  H     
Sbjct: 232 ELNKGLDCDKLEIGKEVCVTVNPTSIAFELPAQSRCGKTYRFKKGDTCYKIWTSHKMSEK 291

Query: 316 VXXSTIRGIMPERL 357
              +  RGI  +RL
Sbjct: 292 QFRALNRGIDCDRL 305


>Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 462 IQNARRDVEAHLDRGDDAIGFFLNTCITAPKSGYNSVR 575
           I  + R+++AH D G+D    FL+  +T   + ++ V+
Sbjct: 170 ISQSARNIQAHYDLGNDMFKLFLDKSMTYSSALFDEVK 207


>AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 462 IQNARRDVEAHLDRGDDAIGFFLNTCITAPKSGYNSVR 575
           I  + R+++AH D G+D    FL+  +T   + ++ V+
Sbjct: 170 ISQSARNIQAHYDLGNDMFKLFLDKSMTYSSALFDEVK 207


>U40959-5|AAA81769.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein46 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 170 SKGNVSWVRPS*DRLVLPY*WLVVAIVIRSVREEPQFRTFGSCTRPSGR 316
           S+G  +W   + D +++P  WL +++VI ++    +F  FG      G+
Sbjct: 480 SRGQTTWTYYNLD-VIIPVFWLSISLVIPTIFGWYKFSCFGHVEEKKGK 527


>L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 583 PRHRTELY--PDFGAVMHVLRKKPIASSPRSKW 491
           P H TE +  P+ G V H+L +KP  SS RS W
Sbjct: 308 PEHPTEHHDVPE-GDVEHLLPEKPTKSSIRSLW 339


>AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform b
           protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 583 PRHRTELY--PDFGAVMHVLRKKPIASSPRSKW 491
           P H TE +  P+ G V H+L +KP  SS RS W
Sbjct: 263 PEHPTEHHDVPE-GDVEHLLPEKPTKSSIRSLW 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,408,320
Number of Sequences: 27780
Number of extensions: 266338
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)