Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0142
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 459 RIQNARRDVEAHLDRGDDAIGFF 527
           ++Q     VEAHL +G  AIG +
Sbjct: 180 QLQGISTPVEAHLRKGRGAIGAY 202


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 314 GRSAECMNQMSETAVPLVLSVLL 246
           G+  +C N MSE  V ++L   +
Sbjct: 173 GKEFDCHNYMSELTVDILLETAM 195


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 61  LACGSQAFIATLLFDPSMSALPIIANKIRQALDCSPIKRER 183
           + CG Q F A   F    +AL    N+I +  + S    +R
Sbjct: 719 IVCGIQRFAAGFCFTVVYAALLTKTNRISRIFNASKHSAKR 759


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -3

Query: 399 SISLPDSARLASALEAFRHNPADGTSXHRPLGRVHEPNVRNCGSSRTERITIATTS 232
           +++LP S    S  E  +H P   T     +  + + +  NC  +R    T +++S
Sbjct: 364 NVTLPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKVHHTTSSSS 419


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 315 RPLGRVHEPNVRNCGSSRTERITIATTS 232
           RP+ RV +    NCG     RI   T +
Sbjct: 140 RPIKRVKDSTNCNCGWKNPSRIVGGTNT 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,750
Number of Sequences: 438
Number of extensions: 3304
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)