Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0141
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    33   0.025
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   1.6  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    27   2.1  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   3.7  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   5.0  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   6.5  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   6.5  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   6.5  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   8.7  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.7  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 205 ASEVVNFDESG*LLQIAGHPPATHLSNVCLINFRW*F---LRLPWLSRVTGNQGSIPERE 375
           + E+++F E    L   G   +  L   C+IN  W     LRL +L +   NQ S  E++
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEEQK 302

Query: 376 PEKRLP 393
            EKR+P
Sbjct: 303 QEKRVP 308


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 414 RANYPLPAREVVTKNNDT 467
           +AN P+P  EVVT+NN T
Sbjct: 199 KANIPVPTSEVVTENNVT 216


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 588 FSIRYWSWNYRGCWHQTCPPIVPR*NIKVYSFRLR 484
           F   Y  WNY G  +Q  P  +P    KV+   LR
Sbjct: 96  FKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLR 130


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 299 LIRQTFERCVAGG*PAICKSYPDSSKL 219
           LI   F +CVA G   +C S P S  L
Sbjct: 81  LIAMVFVQCVANGMAELCSSMPTSGGL 107


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 402 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 304
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 400 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 299
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 338 RDNHGSRRNYHR-KLIRQTFERCVAGG*PAICKS-YPDSSKLTTSDARPS 195
           +D+H SRR Y + KL+  T       G PA  KS    SS   T   RP+
Sbjct: 2   KDSHSSRRKYEKEKLVFATNNGKRTEGTPAFLKSGNTASSSSPTLQFRPT 51


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 449 HYLPCREWVICAPA 408
           HY+PC+ W++  P+
Sbjct: 455 HYIPCQSWLVWYPS 468


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 259 DQRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIP 158
           DQ   K   IH +  L  +  PS GF +I++L+P
Sbjct: 393 DQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 501 YSFRLRGLVRVPYRYFSSLPPVPGVGNL 418
           YS RLR  ++  Y+Y   + P PG+ ++
Sbjct: 271 YSHRLRDSLKEVYQYRRIISPPPGLSSM 298


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 54  NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 158
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +2

Query: 182 KTNRRRASRPKSLILMNLDNFCRSLVTHRRRIFQMSALSTFDG--SFCDYHGCH 337
           +T   +      L+   L ++C S   H   +  +  +  F    SF DYH CH
Sbjct: 584 RTMNSKTDEGARLLTDKLISYCYSSALHIVDLLVLLRMHKFLSVYSFMDYHSCH 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,225
Number of Sequences: 5004
Number of extensions: 50161
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)