Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0138
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 1.1
At1g50260.1 68414.m05635 C2 domain-containing protein low simila... 30 1.4
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put... 30 1.8
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative... 28 5.6
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 28 5.6
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s... 28 7.4
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 7.4
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 7.4
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 9.8
At3g03650.1 68416.m00368 exostosin family protein contains Pfam ... 27 9.8
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 27 9.8
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 684 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTS 544
LG +H PA +I+R P PP +S +++++F E +CY S
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVS 275
>At1g50260.1 68414.m05635 C2 domain-containing protein low
similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
contains Pfam profile PF00168: C2 domain
Length = 675
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 91 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 207
R+RVLRPS + + + +S FR S T R A N
Sbjct: 37 RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75
>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 884
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 74 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 208
T+ T SG R++L+ R+ D HD + PFNG T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222
>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 239
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 98 RVRIQSET*DDFRECHIKYIQFLRPH 21
R+RIQ DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCL 237
++ SSY +WI V D+P + S ++ +R ++ +
Sbjct: 336 NKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAF 395
Query: 238 IKTKHWMALAGVDAM*FLPSXLNVN--VKKFKQ 330
+ HW G+D M F + N+N V +++Q
Sbjct: 396 L---HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 425
>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 534
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 26 ASKTVYI*YDTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPF 190
ASK + I Y RENR+ ++ G+ GL R + V+ C + + D P F
Sbjct: 154 ASKGINIRYQIRENRVGYKAGA--LKEGLKRSY--VKHCEYVVIFDADFQPEPDF 204
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 648 DRAPLPPNRVSNETMKVVVFQRRSRET 568
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 699 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 562
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 687 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 592
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At3g03650.1 68416.m00368 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 499
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/92 (28%), Positives = 37/92 (40%)
Frame = -3
Query: 720 ATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSH 541
+ S S PL + + +P + AP P NR ET + + R +T S +
Sbjct: 49 SVSESTDVPLIIIKNSNSSPQN---NAPKPQNREGAETEEPIKENRGGTKTESSMNQNRG 105
Query: 540 XSLQCQTRVKLTGSSFPADSPKPVPLAVVSLD 445
+L+C RV SP P PL V D
Sbjct: 106 ETLRCIQRV----------SPSPRPLKVYMYD 127
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 369 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKK 500
G +P + +SD + INE+ P +AK +E + GK+
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,703,675
Number of Sequences: 28952
Number of extensions: 319113
Number of successful extensions: 791
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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