Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0134
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.57 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   4.0  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   5.4  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.4  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    26   7.1  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   7.1  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   7.1  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   9.4  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = -1

Query: 206 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 54
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 745 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKN 608
           +P +S V  +   IPER+  + L  P       + H    EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 307 WAXNFTLNKLECSKRAKKLLEYFVHGIIEYDLGSILLVF 191
           W    T+N L  ++   K L+Y  +G++  D+ SIL V+
Sbjct: 488 WLFCVTVNSL--TQLVLKSLKYDTYGVVARDISSILAVY 524


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +3

Query: 567 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 668
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -1

Query: 782 MSALSTLMVVSATTMVVTGNGESGFDSGEGA*ETATTSKEGSRRANYPLP 633
           MSA +T  VV   T  +TG  E  F        TA T+ +G R +  PLP
Sbjct: 1   MSATATTTVVEPPTTTLTGATEPPF--------TAYTTSQGLRVSPVPLP 42


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 665 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 763
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 161 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 54
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 751 LRLPWLSRVTGNQGSIPEREPEKRLP 674
           LRL +L +   NQ S  E++ EKR+P
Sbjct: 283 LRLQFLIQQRNNQSSNEEQKQEKRVP 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,996
Number of Sequences: 5004
Number of extensions: 65099
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)