Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0130
         (428 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK130753-1|BAC85422.1|  201|Homo sapiens protein ( Homo sapiens ...    31   1.7  
U95025-1|AAB72040.1|  908|Homo sapiens metabotropic glutamate re...    31   2.2  
U92459-1|AAB51764.1|  908|Homo sapiens metabotropic glutamate re...    31   2.2  
BC101675-1|AAI01676.1|  908|Homo sapiens glutamate receptor, met...    31   2.2  
BC093725-1|AAH93725.1|  908|Homo sapiens glutamate receptor, met...    31   2.2  
AY608335-1|AAT37959.1|  908|Homo sapiens metabotropic glutamate ...    31   2.2  
AJ236921-1|CAB36968.1|  908|Homo sapiens metabotropic glutamate ...    31   2.2  
BC040847-1|AAH40847.1|  373|Homo sapiens doublesex and mab-3 rel...    29   6.7  
AL162131-1|CAB82427.1|  373|Homo sapiens human DMRT1 protein rel...    29   6.7  
AL136365-1|CAB99335.1|  373|Homo sapiens doublesex and mab-3 rel...    29   6.7  
AJ276801-1|CAB82851.1|  373|Homo sapiens doublesex and MAB-3 rel...    29   6.7  
AF130728-1|AAD40474.1|  373|Homo sapiens doublesex and mab-3 rel...    29   6.7  
M69008-1|AAA52754.1|  623|Homo sapiens alpha-1 type XIII collage...    29   8.8  
M59217-1|AAA51685.1|  584|Homo sapiens alpha-1 type XIII collage...    29   8.8  
AL138925-3|CAI15452.1|  683|Homo sapiens collagen type XIII alph...    29   8.8  
AL138925-2|CAI15451.2|  695|Homo sapiens collagen type XIII alph...    29   8.8  
AL138925-1|CAI15450.1|  717|Homo sapiens collagen type XIII alph...    29   8.8  
AJ293624-1|CAC00688.1|  717|Homo sapiens type XIII collagen prot...    29   8.8  

>AK130753-1|BAC85422.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ27243 fis, clone SYN08134. ).
          Length = 201

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 276 SFSVARVRPGHLRASQTCYCSISCGSKTPVPLRRI 172
           S  V   R  HLRA  T  C + C S++PV LR +
Sbjct: 101 SIRVQTTRLSHLRAGVTLRCVLLCVSESPVGLRSV 135


>U95025-1|AAB72040.1|  908|Homo sapiens metabotropic glutamate
           receptor 8 protein.
          Length = 908

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +1

Query: 244 MSWAHARYTEGISMFSLA*RPGQPAET----PSCW 336
           M WAH  +T   S+ SL  +PG+  +T    P CW
Sbjct: 502 MQWAHREHTHPASVCSLPCKPGERKKTVKGVPCCW 536


>U92459-1|AAB51764.1|  908|Homo sapiens metabotropic glutamate
           receptor 8 protein.
          Length = 908

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +1

Query: 244 MSWAHARYTEGISMFSLA*RPGQPAET----PSCW 336
           M WAH  +T   S+ SL  +PG+  +T    P CW
Sbjct: 502 MQWAHREHTHPASVCSLPCKPGERKKTVKGVPCCW 536


>BC101675-1|AAI01676.1|  908|Homo sapiens glutamate receptor,
           metabotropic 8 protein.
          Length = 908

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +1

Query: 244 MSWAHARYTEGISMFSLA*RPGQPAET----PSCW 336
           M WAH  +T   S+ SL  +PG+  +T    P CW
Sbjct: 502 MQWAHREHTHPASVCSLPCKPGERKKTVKGVPCCW 536


>BC093725-1|AAH93725.1|  908|Homo sapiens glutamate receptor,
           metabotropic 8, precursor protein.
          Length = 908

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +1

Query: 244 MSWAHARYTEGISMFSLA*RPGQPAET----PSCW 336
           M WAH  +T   S+ SL  +PG+  +T    P CW
Sbjct: 502 MQWAHREHTHPASVCSLPCKPGERKKTVKGVPCCW 536


>AY608335-1|AAT37959.1|  908|Homo sapiens metabotropic glutamate
           receptor 8 splice variant b protein.
          Length = 908

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +1

Query: 244 MSWAHARYTEGISMFSLA*RPGQPAET----PSCW 336
           M WAH  +T   S+ SL  +PG+  +T    P CW
Sbjct: 502 MQWAHREHTHPASVCSLPCKPGERKKTVKGVPCCW 536


>AJ236921-1|CAB36968.1|  908|Homo sapiens metabotropic glutamate
           receptor 8b protein.
          Length = 908

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +1

Query: 244 MSWAHARYTEGISMFSLA*RPGQPAET----PSCW 336
           M WAH  +T   S+ SL  +PG+  +T    P CW
Sbjct: 502 MQWAHREHTHPASVCSLPCKPGERKKTVKGVPCCW 536


>BC040847-1|AAH40847.1|  373|Homo sapiens doublesex and mab-3
           related transcription factor 1 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 339 SPARRSFSGLPGPLGQGEHADSFSVARVRPGHLRASQ 229
           SP + S  GLPGP   G+  + + +  +   H  +SQ
Sbjct: 251 SPVKNSLRGLPGPYVPGQTGNQWQMKNMENRHAMSSQ 287


>AL162131-1|CAB82427.1|  373|Homo sapiens human DMRT1 protein
           related to Drosophila doublesex protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 339 SPARRSFSGLPGPLGQGEHADSFSVARVRPGHLRASQ 229
           SP + S  GLPGP   G+  + + +  +   H  +SQ
Sbjct: 251 SPVKNSLRGLPGPYVPGQTGNQWQMKNMENRHAMSSQ 287


>AL136365-1|CAB99335.1|  373|Homo sapiens doublesex and mab-3
           related transcription factor 1 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 339 SPARRSFSGLPGPLGQGEHADSFSVARVRPGHLRASQ 229
           SP + S  GLPGP   G+  + + +  +   H  +SQ
Sbjct: 251 SPVKNSLRGLPGPYVPGQTGNQWQMKNMENRHAMSSQ 287


>AJ276801-1|CAB82851.1|  373|Homo sapiens doublesex and MAB-3
           related transcription factor 1 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 339 SPARRSFSGLPGPLGQGEHADSFSVARVRPGHLRASQ 229
           SP + S  GLPGP   G+  + + +  +   H  +SQ
Sbjct: 251 SPVKNSLRGLPGPYVPGQTGNQWQMKNMENRHAMSSQ 287


>AF130728-1|AAD40474.1|  373|Homo sapiens doublesex and mab-3
           related transcription factor 1 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 339 SPARRSFSGLPGPLGQGEHADSFSVARVRPGHLRASQ 229
           SP + S  GLPGP   G+  + + +  +   H  +SQ
Sbjct: 251 SPVKNSLRGLPGPYVPGQTGNQWQMKNMENRHAMSSQ 287


>M69008-1|AAA52754.1|  623|Homo sapiens alpha-1 type XIII collagen
           protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 369 SFMGDNCKPQSPARRSFSGLPGPLG 295
           S +G    P  P  R F G PGP+G
Sbjct: 61  SIIGPRGPPGQPGTRGFPGFPGPIG 85


>M59217-1|AAA51685.1|  584|Homo sapiens alpha-1 type XIII collagen
           protein.
          Length = 584

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 369 SFMGDNCKPQSPARRSFSGLPGPLG 295
           S +G    P  P  R F G PGP+G
Sbjct: 71  SIIGPRGPPGQPGTRGFPGFPGPIG 95


>AL138925-3|CAI15452.1|  683|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 369 SFMGDNCKPQSPARRSFSGLPGPLG 295
           S +G    P  P  R F G PGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178


>AL138925-2|CAI15451.2|  695|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 695

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 369 SFMGDNCKPQSPARRSFSGLPGPLG 295
           S +G    P  P  R F G PGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178


>AL138925-1|CAI15450.1|  717|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 369 SFMGDNCKPQSPARRSFSGLPGPLG 295
           S +G    P  P  R F G PGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178


>AJ293624-1|CAC00688.1|  717|Homo sapiens type XIII collagen
           protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 369 SFMGDNCKPQSPARRSFSGLPGPLG 295
           S +G    P  P  R F G PGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,475,144
Number of Sequences: 237096
Number of extensions: 1404128
Number of successful extensions: 3661
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3661
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)