Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0129
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   2.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   2.7  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.7  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   6.3  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   6.3  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   8.4  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   8.4  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 577 ARKIRGRPENAGPDPVRNVRRFSE 506
           AR I GRPEN G   ++N+ R S+
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSK 237


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 394 SGCGRCRVWSMFVRNVRFSE 453
           +GCG+  VW  +VR V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 256 GTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 137
           GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 374 GTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
 Frame = -1

Query: 556 PENAGPDPVRNVRRFSECHIKYIQFLXPHYIKI--------LTR*NEHYARTS-TRPGTG 404
           P +  PDPV  +   S  H+       PH+  +         T  + H A +S T P +G
Sbjct: 158 PISTLPDPVATISSSSSSHLDMGAIHPPHHSSLPPHMGVDPSTMADAHNAHSSLTPPQSG 217

Query: 403 RIRFPSKPDTPRSSEPILIPKLR 335
              + S P  P   +P  IP  R
Sbjct: 218 ---YSSMPSLPYLQQPFQIPSQR 237


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 173 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 36
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 431 TNIDQTRHRPHPLPVQTRHAPV 366
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = -3

Query: 272 DLLRIWYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGF 126
           D+ R  Y     LH  P P F     SI +   + CS  S    P   F
Sbjct: 83  DVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVASLTCSVNSMSVSPQSNF 131


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 32  RVFDGVTQSGLKTPPRGPGRV 94
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 32  RVFDGVTQSGLKTPPRGPGRV 94
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,362
Number of Sequences: 5004
Number of extensions: 52876
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)