Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0129
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0567 + 4469926-4470055,4470827-4470886,4471418-4471635           31   0.53 
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.70 
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    31   0.70 
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111     31   0.92 
06_01_0350 + 2534422-2535615                                           31   0.92 
02_01_0147 - 1048117-1048329,1048522-1049682,1049783-1050070           30   1.2  
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   2.1  
06_03_1041 - 27086661-27086981,27087089-27087295,27087398-270876...    29   2.1  
05_06_0098 + 25560158-25560925                                         29   2.8  
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877...    29   2.8  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   3.7  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   3.7  
02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569           29   3.7  
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    28   4.9  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   6.5  
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    28   6.5  
05_02_0120 - 6797954-6798970,6799466-6799951                           28   6.5  
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34...    27   8.6  

>11_01_0567 + 4469926-4470055,4470827-4470886,4471418-4471635
          Length = 135

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -3

Query: 407 RPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWYEPARHLHV 228
           RP P PV T HA  +  +P S    P+  LP+  L   +  +   D++  +Y+  +    
Sbjct: 15  RPPPPPVPTSHATTIVVDPDSTRRPPL--LPVDGLIIEINHVSCYDMIEQFYDKIKEAQD 72

Query: 227 HPS 219
            PS
Sbjct: 73  SPS 75


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -3

Query: 431 TNIDQTRH------RPHPLPVQTRHAPVLRANP 351
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = -3

Query: 224 PSPEFSRSA-ESIRTPPQM------RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAAS 66
           P P+ SRS  ES R  P          S   +  +   GFHG   L+   KL PDL +  
Sbjct: 168 PPPKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWL 226

Query: 65  SGHFGLPRRTLVFKDEGTI 9
             HF      LVF   G I
Sbjct: 227 MEHFNPATNQLVFPGRGAI 245


>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
          Length = 553

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = -3

Query: 281 HLGDLLRIWYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRT-LR 105
           HL +++       RH  V  SP   R+  + RT P  R + R     PSI    +RT  +
Sbjct: 240 HLANVVNQGLTQTRHTSVRVSPSVGRTVSATRTTPATR-AGRGMSNAPSIQIPQSRTRFK 298

Query: 104 QKRKLFPDLSAASSGHFG 51
           +     P +   +   FG
Sbjct: 299 RVGATSPGIVTLNDNQFG 316


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 126 PWNSNAQAEKKTLPGPLGGVFRP 58
           PW S+A+ E+K LP PL  +F P
Sbjct: 42  PWRSSARLERKLLPPPLPWLFLP 64


>02_01_0147 - 1048117-1048329,1048522-1049682,1049783-1050070
          Length = 553

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/94 (22%), Positives = 40/94 (42%)
 Frame = -2

Query: 366 PQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMVRTGATSPRTSLT*IFKVRREYP 187
           P   S+ +  G +LP S   ++   R +S W   A++V+   TS       +     ++ 
Sbjct: 303 PTVASMAQELGESLPLSTAELVKKLRSASQWPAEAELVQELLTSSS-----VLDKAMDWS 357

Query: 186 DTAANAVLFAFRTISPFYRIPWNSNAQAEKKTLP 85
           ++     L  F TI+ +  I    +A   ++ LP
Sbjct: 358 ESEVKLNLHGFSTIAAYVLILQWVDAMKARRALP 391


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 401 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 312
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>06_03_1041 -
           27086661-27086981,27087089-27087295,27087398-27087675,
           27088360-27088471
          Length = 305

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 290 EALHLGDLLRIWYEPARHLHVH 225
           EALH+GD +R  Y PAR + +H
Sbjct: 236 EALHIGDSMRKDYTPARSIGMH 257


>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 410 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 288
           HRP P P  +   P L  +P + V   I   P PT F + +
Sbjct: 31  HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQAD 71


>04_04_0158 -
           23187070-23187264,23187347-23187477,23187550-23187763,
           23187834-23187932,23188034-23188156,23188247-23188366,
           23188447-23188506,23188592-23188884,23189554-23189707,
           23189813-23190130,23190668-23190798,23191001-23191586,
           23192125-23192739
          Length = 1012

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
 Frame = -3

Query: 404 PHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLR-IWYEPARHLHV 228
           PHP P     A      P   +  PI   P P L  +     + D LR + Y  A H   
Sbjct: 7   PHPSPPLLPPAASRTRPPPRLLLPPIHASPSPELLAKSALRRISDKLRSLGYLEADHPEA 66

Query: 227 HP---SPEFSRSAES----IRTP---PQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDL 78
            P   +PE    A      + TP   P+ R  S  +P   +    G    R++R+   D 
Sbjct: 67  APGPAAPEAGAGASPGEIFVPTPAQLPRHRVGSTLDPSWATGDGEGAAASRRRRRGGRDS 126

Query: 77  SAASS 63
           SAA+S
Sbjct: 127 SAAAS 131


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 395 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 282
           +P Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 407 RPHPLPVQTRHAPVLRANPYSEVTDP 330
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


>02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569
          Length = 272

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 290 EALHLGDLLRIWYEPARHLHVH 225
           EALH+GD +R  Y PAR   +H
Sbjct: 192 EALHIGDSMRKDYAPARRAGMH 213


>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -3

Query: 449 LKRTLRTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 276
           +K +   N+D    RP P PV       LRA PY     P  +  + L  +   L ++++
Sbjct: 1   MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60

Query: 275 GDLLR 261
            D  R
Sbjct: 61  NDCPR 65


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -1

Query: 433 ARTSTRPGTGRIRFPSKPDTPRSSE 359
           A TST PG GR R PS P TP  S+
Sbjct: 16  AATSTDPGRGRKRPPS-PSTPTPSD 39


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 421 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 335
           TRP TG+   P K D  RS   + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136


>05_02_0120 - 6797954-6798970,6799466-6799951
          Length = 500

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = +2

Query: 368 PGRVGFGREADAAGA-----GSGRCSCVMFVLAS*YFNIMRXQKLYIFNMTLRKSSYVSD 532
           PGR G GRE  A G      G GR +CV    A     ++    L  F + L      +D
Sbjct: 419 PGRFGAGREEGAGGLAYTAFGGGRHACVGEAFAYMQIKVIWSHLLRNFELQLVSPFPETD 478

Query: 533 W 535
           W
Sbjct: 479 W 479


>03_01_0038 -
           340564-341108,341214-341463,341546-341649,341728-343255,
           343995-344056,344578-344728
          Length = 879

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -3

Query: 362 RANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWYEPARHLHVHPSPEFSRSAESIRT 183
           R +   E+   I      ++FY     HL D+L    E   H   HP+   S+S   + +
Sbjct: 446 RNDGLGEINGDIITSKDTSIFYEEAKKHLTDIL----EYNSHTTKHPTVHTSKSLIGMLS 501

Query: 182 PPQMRCSS-RSEPYL 141
            PQ   SS RS P L
Sbjct: 502 LPQRNASSPRSSPRL 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,636,820
Number of Sequences: 37544
Number of extensions: 392795
Number of successful extensions: 1452
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)