Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0127
         (599 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.49 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.49 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.49 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   2.6  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   6.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   6.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.9  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 299 TRPSGRWCELPSAGLC 346
           ++ S + CE+PSAGLC
Sbjct: 97  SKKSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 299 TRPSGRWCELPSAGLC 346
           ++ S + CE+PSAGLC
Sbjct: 45  SKKSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 299 TRPSGRWCELPSAGLC 346
           ++ S + CE+PSAGLC
Sbjct: 228 SKKSCQGCEMPSAGLC 243


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 462 IQNARRDVEAHLDRGDDAIGFF 527
           +Q     VEAHL +G  AIG +
Sbjct: 182 LQGISAPVEAHLRKGRGAIGAY 203


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -2

Query: 577 HRTELYPDFGAVMHVLRKKPIASSPRSKWASTSRLAF--*MRNATSKVTLFRASRLSG 410
           H +  YP   A   + RK  I  S  S W    R+ +   +  A  +  L+ A + +G
Sbjct: 252 HLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAG 309


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 17/65 (26%), Positives = 22/65 (33%)
 Frame = -1

Query: 395 YPCRIRLGWLRP*RRSGIIPRMVVRTTGRSAECMNQMSETAVPLVLSVLLSQRQAISRVK 216
           YP      W+ P  R    P    R  GR      Q  E       +  L++R+ I    
Sbjct: 133 YPWMSITDWMSPFDRVVCGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAH 192

Query: 215 LTCLT 201
             CLT
Sbjct: 193 ALCLT 197


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 17/65 (26%), Positives = 22/65 (33%)
 Frame = -1

Query: 395 YPCRIRLGWLRP*RRSGIIPRMVVRTTGRSAECMNQMSETAVPLVLSVLLSQRQAISRVK 216
           YP      W+ P  R    P    R  GR      Q  E       +  L++R+ I    
Sbjct: 192 YPWMSITDWMSPFDRVVCGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAH 251

Query: 215 LTCLT 201
             CLT
Sbjct: 252 ALCLT 256


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 469 TRDATSKPIWIAETMLSVFFLTRASRLR 552
           TR+  ++   + E  + V+F  R +RLR
Sbjct: 249 TREELAQRTKLTEARIQVWFSNRRARLR 276


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,845
Number of Sequences: 336
Number of extensions: 2758
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)