Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0126
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   136   3e-33
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    28   1.3  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    27   2.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   5.4  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   7.1  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   9.4  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  136 bits (330), Expect = 3e-33
 Identities = 58/84 (69%), Positives = 71/84 (84%)
 Frame = +2

Query: 257 IPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRD 436
           IPERVVHAKG+GAFG FE T DITKY+   +F  +GK+TP+  RFSTVGGE G+ DT RD
Sbjct: 54  IPERVVHAKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARD 113

Query: 437 PRGFAVKFYTDDGVWDLVGNNTPI 508
           PRGFA+KFYTD+G++D+VGNNTP+
Sbjct: 114 PRGFALKFYTDEGIFDMVGNNTPV 137



 Score =  109 bits (261), Expect = 6e-25
 Identities = 47/92 (51%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
 Frame = +1

Query: 508 FFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLXXFGD-RGIPDGYRH 684
           FF+RDP  FP FIHTQKRNP   +KD  MFWD+L+   E+IHQ++  F D  G P  YR 
Sbjct: 138 FFLRDPAKFPLFIHTQKRNPQNDMKDATMFWDYLSQNAESIHQVMILFSDLGGTPYSYRF 197

Query: 685 MNGYGSHTFKLVNSQGVGYWVKFHYKLTRGLK 780
           M+G+ SHT+K VN +G  Y+ K+H+   +G K
Sbjct: 198 MDGFSSHTYKFVNDKGEFYYCKWHFITNQGTK 229



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/40 (47%), Positives = 23/40 (57%)
 Frame = +3

Query: 135 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRE 254
           TT +G P+    A   VGK GP LLQD + +D    FDRE
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRE 52


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 511 FIRDPTLFPSFIHTQKRNPATHLKDP 588
           +++DPTL P F+HT  R   T   +P
Sbjct: 506 WVKDPTLTPKFLHTSYRAVQTDNDNP 531


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 440 RGFAVKFYTDDGVWDLVGNNTPISL*EIQHYSRVLS--ILRRETLQHI*KIQTCFGTF 607
           +G+ V + T+  VWDLV  N  +    +  YS +L+  +    +++H   IQ  F  F
Sbjct: 65  KGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHN-TIQLVFEEF 121


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 452 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 327
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 23/86 (26%), Positives = 34/86 (39%)
 Frame = -2

Query: 492 PTKSHTPSSV*NFTAKPRGSRTVSADPLSPPTVENLTAIGVLLPMDSNTLAALYLVMS*V 313
           P  S + S   + +  P G+ T    P  PPT  + T+     P  ++T +         
Sbjct: 331 PLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTP---PPPASTSST-------G 380

Query: 312 TSKYPKAPAPLACTTRSGIPPCQRMT 235
           TS  P      +CTT + IPP    T
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNST 406



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
 Frame = -2

Query: 477 TPSSV*NFTAKPRGSRTVSADPLSPPTVENLTAIGVLLPMDSNTLAAL----YLVMS*VT 310
           T S+  N +  P  S + +     PPT  + T +   +P  S +  +         S  T
Sbjct: 268 TSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 327

Query: 309 SKYPKAPAPLACTTRSGIPPCQRMT 235
           S  P      +CTT + IPP    T
Sbjct: 328 SSSPLPSTSTSCTTSTSIPPTGNST 352


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +1

Query: 538 SFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLXXFGDRGIPDGYRHMN 690
           ++ HT+K       K     WDF   R E + +LL  F        +  +N
Sbjct: 325 NYEHTEKELSVLQFKGVSSRWDFRCCREERLLRLLLCFDSEHTGQSFIQLN 375


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 426 VSADPLSPPTVENLTAIGVLLPMDSNTL 343
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 196 PFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL*LMSWSVAGSLEAILYVPFLLCGV 29
           P + T  ++ L+P  +  L V+ P     +   +        LE I Y+PFLL G+
Sbjct: 195 PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSIPDLEFISYLPFLLDGL 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,612,671
Number of Sequences: 5004
Number of extensions: 80586
Number of successful extensions: 236
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)