Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0126
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 119 3e-27
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 118 5e-27
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 114 7e-26
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 33 0.35
03_01_0605 - 4453409-4453692,4454541-4454594,4454706-4454812,445... 29 4.3
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 29 5.6
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 28 7.4
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 7.4
02_04_0493 + 23435395-23436003 28 9.8
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 119 bits (286), Expect = 3e-27
Identities = 54/84 (64%), Positives = 65/84 (77%)
Frame = +2
Query: 257 IPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRD 436
IPERVVHA+GA A G+FEVTHDIT + A + G +TP+ VRFSTV E GS +T+RD
Sbjct: 59 IPERVVHARGASAKGFFEVTHDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 118
Query: 437 PRGFAVKFYTDDGVWDLVGNNTPI 508
PRGFA+KFYT +G WDLVGNN P+
Sbjct: 119 PRGFAIKFYTREGNWDLVGNNFPV 142
Score = 92.7 bits (220), Expect = 3e-19
Identities = 41/92 (44%), Positives = 58/92 (63%)
Frame = +1
Query: 508 FFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLXXFGDRGIPDGYRHM 687
FFIRD FP +H+ K NP +H+++ DF + PE++H F D GIP YRHM
Sbjct: 143 FFIRDGMKFPDMVHSLKPNPKSHVQENWRILDFFSHHPESLHMFTFLFDDIGIPADYRHM 202
Query: 688 NGYGSHTFKLVNSQGVGYWVKFHYKLTRGLKT 783
+G G +T+ LVN G ++VKFH+K T G+K+
Sbjct: 203 DGSGVNTYTLVNRAGKSHYVKFHWKPTCGVKS 234
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +3
Query: 135 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRE 254
+T SGAPV TVG GP LL+D + ++++++FDRE
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDRE 57
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 118 bits (284), Expect = 5e-27
Identities = 53/84 (63%), Positives = 64/84 (76%)
Frame = +2
Query: 257 IPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRD 436
IPERVVHA+GA A G+FE THD+T + A S G +TP+ VRFSTV E GS +T+RD
Sbjct: 71 IPERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRD 130
Query: 437 PRGFAVKFYTDDGVWDLVGNNTPI 508
PRGFAVKFYT +G WDL+GNN P+
Sbjct: 131 PRGFAVKFYTREGNWDLLGNNFPV 154
Score = 86.2 bits (204), Expect = 3e-17
Identities = 39/90 (43%), Positives = 54/90 (60%)
Frame = +1
Query: 508 FFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLXXFGDRGIPDGYRHM 687
FFIRD FP IH K NP +H+++ +DFL+ PE++H F D GIP YRHM
Sbjct: 155 FFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFLFDDVGIPTDYRHM 214
Query: 688 NGYGSHTFKLVNSQGVGYWVKFHYKLTRGL 777
+G+G +T+ V +VKFH+K T G+
Sbjct: 215 DGFGVNTYTFVTRDAKARYVKFHWKPTCGV 244
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 135 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRE 254
TT +GAPV TVG GP LL+D + +++++ F RE
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARE 69
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 114 bits (275), Expect = 7e-26
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +2
Query: 257 IPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRD 436
IPERVVHA+GA A G+FEVTHDI+ + A + G +TP+ VRFSTV E GS +T+RD
Sbjct: 59 IPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRD 118
Query: 437 PRGFAVKFYTDDGVWDLVGNNTPI 508
PRGFAVKFYT +G +DLVGNN P+
Sbjct: 119 PRGFAVKFYTREGNFDLVGNNMPV 142
Score = 87.0 bits (206), Expect = 2e-17
Identities = 39/91 (42%), Positives = 55/91 (60%)
Frame = +1
Query: 508 FFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLXXFGDRGIPDGYRHM 687
FFIRD FP +H K +P T++++ DF + PE++H F D GIP YRHM
Sbjct: 143 FFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPLNYRHM 202
Query: 688 NGYGSHTFKLVNSQGVGYWVKFHYKLTRGLK 780
G+G +T+ L+N G + VKFH+K T G+K
Sbjct: 203 EGFGVNTYTLINKDGKPHLVKFHWKPTCGVK 233
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = +3
Query: 129 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRE 254
F TT SGAPV + TVG+ GP LL+D + +++++ FDRE
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRE 57
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 533 NNVGSLIKKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLH 402
N + LI K + QL H Q + LQQ+ H+Q Q ++ LH
Sbjct: 374 NKIDMLIAKIAHLQQLQQQGHSQQQQLQQSTISHQQAQSLNQLH 417
>03_01_0605 -
4453409-4453692,4454541-4454594,4454706-4454812,
4454865-4454928,4456996-4457896
Length = 469
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -2
Query: 432 RTVSADPLSPPT--VENLTAIGVLLPMDSNTLAALYLVMS*VTSKYPKAPAPLACTTRSG 259
R + DPLS P V T G P S TL A L + + S P + A ++ + SG
Sbjct: 18 RALPVDPLSLPRLLVSAATTPGAAAPAVS-TLHAAALKLGVLPSSLPASNALVSAYSLSG 76
Query: 258 IPPCQRMTF 232
+ PC F
Sbjct: 77 LLPCALRAF 85
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -3
Query: 536 GNNVGSLIKKWE-YYFQLNPTLHHQYRTLQQNLEGHEQYQQIHS 408
G N GS K E Y++ +PTL H+YR + +L +EQ QQ+ S
Sbjct: 351 GTN-GSNPKHLELYFYDDDPTLEHRYRRCRPDL--YEQDQQVVS 391
>04_04_1157 - 31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 272 VHAKGAGAFGYFEVTHDITKYSAAKV-FESIGKRTPIAVRFSTVGGESGSADTVRDPRGF 448
V K AG FGY + + + KV + G V T+ G DT+ +
Sbjct: 787 VSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-----VVLLETLAGRPNYDDTLEED--- 838
Query: 449 AVKFYTDDGVWDLVGNNTPISL 514
K Y + W+L NN P+ L
Sbjct: 839 --KIYIFEWAWELYENNNPLGL 858
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 226 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 116
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
>02_04_0493 + 23435395-23436003
Length = 202
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 226 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL 101
R L SC GP PT C ++I P+L +PG++ V L
Sbjct: 111 RCLLSC--CGPMDPTSCTDLVIDLADPELWYCRPGDNHWVKL 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,067,798
Number of Sequences: 37544
Number of extensions: 527736
Number of successful extensions: 1254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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