Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0125
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 32 0.57
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 32 0.57
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 29 3.0
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 5.3
SB_39139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 9.3
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3
Query: 422 DVVAVSQAPSPESNPDSPLPVTTM 351
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/28 (75%), Positives = 21/28 (75%)
Frame = +2
Query: 2 LPVVICLSQRLSHACLSASRIKAIPRMA 85
LPVVICLSQRLSHACLS S RMA
Sbjct: 134 LPVVICLSQRLSHACLSISTCTVKLRMA 161
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/28 (75%), Positives = 21/28 (75%)
Frame = +2
Query: 2 LPVVICLSQRLSHACLSASRIKAIPRMA 85
LPVVICLSQRLSHACLS S RMA
Sbjct: 110 LPVVICLSQRLSHACLSISTRTVKLRMA 137
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -3
Query: 413 AVSQAPSPESNPDSPLPVTTM 351
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +3
Query: 504 EARNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 671
+ R ++++ R +WRASL Y K+VAVKKLVV F VG P
Sbjct: 47 QTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/42 (47%), Positives = 22/42 (52%)
Frame = +3
Query: 546 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 671
R +WRASL Y K+VAVKKLVV F VG P
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.061
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -1
Query: 412 PFLRLPLRNRTLIPRYP 362
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 12 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 146
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 12 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 146
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 866 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.76
Identities = 18/38 (47%), Positives = 19/38 (50%)
Frame = +3
Query: 558 RASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 671
RASL Y K+VAVKKLVV F VG P
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +3
Query: 546 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 671
R ASL Y K+VAVKKLVV F VG P
Sbjct: 24 RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65
>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
Length = 111
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +3
Query: 606 YTKIVAVKKLVVAFVRRAVGAP 671
Y K+VAVKKLVV F VG P
Sbjct: 88 YIKVVAVKKLVVGFRDGTVGPP 109
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +3
Query: 606 YTKIVAVKKLVVAFVRRAVGAP 671
Y K+VAVKKLVV F VG P
Sbjct: 89 YIKVVAVKKLVVGFRDGTVGPP 110
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +3
Query: 606 YTKIVAVKKLVVAFVRRAVGAP 671
Y K+VAVKKLVV F VG P
Sbjct: 17 YIKVVAVKKLVVGFRDGTVGPP 38
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 644 CNYELFNRNNFSIRYWSWNYRGCWH 570
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_39139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 719 GSPTNMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIR 603
G+ + +N S++P + TD HK EL N+N IR
Sbjct: 9 GTHSKTISNRSLNPSITYTDMHRHKSELELKNKNAGKIR 47
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 431 PSLDVVAVSQAPSPESNPDSPLP 363
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 683 SPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 585
S R+RCT S + KC + + F W S+NY
Sbjct: 147 SYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,022,690
Number of Sequences: 59808
Number of extensions: 478082
Number of successful extensions: 1279
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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