Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0121
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 48 1e-06
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 47 3e-06
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 37 0.003
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 33 0.033
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 27 2.1
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 2.1
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 3.7
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 27 3.7
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 3.7
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.9
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 26 4.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 8.6
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 268 VEVVEAKDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPM--SGT 441
V + A+DL +D NGLSD ++T+ Y T V LNP+W E+ +P+
Sbjct: 473 VHINRAEDLSKQDVNGLSDAYITVGFHKFGKPLYCTRVVKQDLNPIWNEYAFIPVFPDQV 532
Query: 442 VNEDSLCLEVWDFD 483
+ + +E+WD D
Sbjct: 533 KAGEKISIELWDSD 546
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 46.8 bits (106), Expect = 3e-06
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 262 LNVEVVEAKDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHF--SLPMS 435
+ V+V++A DL D NG SDPFV L +R T + TLNP + E F LP
Sbjct: 1039 MTVDVIKATDLPAADSNGKSDPFVVFELQGEEVYRTKTHKR--TLNPTFNESFEVELPCK 1096
Query: 436 GTVNEDSLCLEVWDF 480
T N + + WDF
Sbjct: 1097 QTCNFVANVFD-WDF 1110
Score = 32.3 bits (70), Expect = 0.075
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +1
Query: 262 LNVEVVEAKDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSGT 441
+ + + A +L K P D + I MS+++ ++ T V + +NP W+E+ P+
Sbjct: 706 IRIHLRSANNLHSKIPGKKCDSYARI--MSHNTKQFRTVVIASNVNPFWDEYMYAPV--I 761
Query: 442 VNEDSLCLEVWDFD 483
D L+V +++
Sbjct: 762 TKHDIFFLQVMNYN 775
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 36.7 bits (81), Expect = 0.003
Identities = 25/92 (27%), Positives = 43/92 (46%)
Frame = +1
Query: 247 ASGLMLNVEVVEAKDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSL 426
A + V +V A L +D DPF + + +H T++K TLNP W E F +
Sbjct: 5 AQSRRIRVTIVAADGLYKRDVFRFPDPFAVLTVDGEQTHT-TTAIKK-TLNPYWNETFEV 62
Query: 427 PMSGTVNEDSLCLEVWDFDPAETVKEKRQKYL 522
+ ++ ++V+D + K+K Q +L
Sbjct: 63 ---NVTDNSTIAIQVFD---QKKFKKKGQGFL 88
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 33.5 bits (73), Expect = 0.033
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +1
Query: 319 SDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSGTVNEDSLCLEVWDFDPAE 492
SDPFV + L N + + V LNPVW E + + V D L L +D+D E
Sbjct: 1098 SDPFVVLKL--NGESAFKSKVIKKNLNPVWNEEADIVVQNRV-LDVLELVCYDWDMGE 1152
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 340 YLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSGTVNED 453
Y + NSS+ ++TS + G L + PM T++ED
Sbjct: 198 YSLQNSSNIFSTSSRKGDLPKFSDYSAEKPMYDTISED 235
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/83 (28%), Positives = 38/83 (45%)
Frame = +1
Query: 274 VVEAKDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSGTVNED 453
+V A L +D DPF + + +H T V ++NP W E F + TV
Sbjct: 12 IVAADGLSKRDLFRQPDPFAILTVDGEQTH--TTKVIKKSVNPYWNEGFEV----TVKPS 65
Query: 454 SLCLEVWDFDPAETVKEKRQKYL 522
S+ + + FD + K+K Q +L
Sbjct: 66 SV-ISIRLFD-QKKFKKKDQGFL 86
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 561 EIAITASTGKHDNELIGTSNIPLKSIPAGGMA 656
E I GK +ELI N L ++P GG A
Sbjct: 40 ETLINELNGKDIDELIAAGNEKLATVPTGGAA 71
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -1
Query: 653 HTAGWNGLEWYIRCSNQFVVMFSG*GCNRDLLDQFTE 543
H N +WY N F ++F G G L F E
Sbjct: 241 HFQSRNFHQWYFELVNNFNLLFYGFGSKEHFLSSFVE 277
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 271 EVVEAKDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHF 420
E+++ KD D N L+DPFVTI SS+ + S + + EHF
Sbjct: 299 ELLDEKDKF--DKNSLNDPFVTI---RKSSYEHEISEEHKKHSKKRSEHF 343
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 4.9
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = -1
Query: 500 LTVSAGSKSHTSKQRESSFTVPDMGKEKCSSQTGFRVPDFTDVLYRCDEFDIK*IVTNGS 321
LT+ + +K+ + R+SS + + +S GF T + D DIK + T
Sbjct: 386 LTLPSNTKTPPASARQSS------RRTRSTSGKGFE----TKISINLDS-DIKLLNTLSP 434
Query: 320 LRPF-GSLGTKSLASTTSTFSINPEAL*PPL 231
L F S AST+S FS PE+L PL
Sbjct: 435 LETFFWCCSFPSTASTSSPFSYYPESLPTPL 465
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 561 EIAITASTGKHDNELIGTSNIPLKSIPAGGMA 656
E I GK +ELI N L ++P+GG A
Sbjct: 40 EALIKELDGKDIDELIAAGNEKLATVPSGGAA 71
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 156 PTSQPTSHPPTLC 118
P S PTS+PP LC
Sbjct: 207 PYSSPTSYPPPLC 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,903
Number of Sequences: 5004
Number of extensions: 61074
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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