Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0120
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 32 0.46
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 32 0.46
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 7.5
SB_17017| Best HMM Match : TIL (HMM E-Value=4.8) 27 9.9
SB_35070| Best HMM Match : TIL (HMM E-Value=8.6) 27 9.9
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3
Query: 421 DVVAVSQAPSPESNPDSPLPVTTM 350
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/28 (75%), Positives = 21/28 (75%)
Frame = +1
Query: 1 LPVVICLSQRLSHACLSASRIKAIPRMA 84
LPVVICLSQRLSHACLS S RMA
Sbjct: 134 LPVVICLSQRLSHACLSISTCTVKLRMA 161
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/28 (75%), Positives = 21/28 (75%)
Frame = +1
Query: 1 LPVVICLSQRLSHACLSASRIKAIPRMA 84
LPVVICLSQRLSHACLS S RMA
Sbjct: 110 LPVVICLSQRLSHACLSISTRTVKLRMA 137
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -3
Query: 412 AVSQAPSPESNPDSPLPVTTM 350
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.049
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -1
Query: 411 PFLRLPLRNRTLIPRYP 361
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 502 EACNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVPF 645
+ R ++++ R +WRASL Y K+VAVKKLVV F
Sbjct: 47 QTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 94
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1
Query: 544 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVPF 645
R +WRASL Y K+VAVKKLVV F
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 47
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 11 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 145
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 11 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 145
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 866 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 430 PSLDVVAVSQAPSPESNPDSPLP 362
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)
Length = 171
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 1 LPVVICLSQRLS 36
LPVVICLSQRLS
Sbjct: 155 LPVVICLSQRLS 166
>SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)
Length = 147
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 1 LPVVICLSQRLS 36
LPVVICLSQRLS
Sbjct: 131 LPVVICLSQRLS 142
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 430 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAXTTI 329
P ++ P P++ P P P TTM TTI
Sbjct: 438 PPPSIIPPPTTPLPQTVPTPPRPPTTMTTILTTI 471
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,275,046
Number of Sequences: 59808
Number of extensions: 397815
Number of successful extensions: 994
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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