Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0120
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 42  MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 176
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 14  YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 127
           Y C  +    +     LRR   +  ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 19/80 (23%), Positives = 30/80 (37%)
 Frame = -3

Query: 502 RKSPVSLFIVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAXTTIES 323
           R S  +  + TTS  GSG          V  V  + S   N D+ L +   +   ++++ 
Sbjct: 222 RPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQP 281

Query: 322 **GRHLKDASPVLDHAICKS 263
               H    S  L  + C S
Sbjct: 282 SLASHHSHLSSALGRSACHS 301


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +2

Query: 14  YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 127
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +2

Query: 14  YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 127
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 642 WNYELFNRNNFSIRYWSWNY 583
           +NY   N NN+   Y++ NY
Sbjct: 104 YNYNNNNYNNYKKLYYNINY 123


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 457 RHGR**R*ITIRDSYEACNRNEYTLNI 537
           +H R  R  T+ +SY+A + N  +L++
Sbjct: 29  KHSRRHRDFTVAESYDASSSNSDSLSM 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,073
Number of Sequences: 438
Number of extensions: 3985
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)