Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0118
(428 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 28 3.3
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 27 4.3
Z66521-19|CAA91404.2| 217|Caenorhabditis elegans Hypothetical p... 27 7.5
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 27 7.5
AL031269-4|CAA20335.2| 217|Caenorhabditis elegans Hypothetical ... 27 7.5
AF303256-1|AAG50214.1| 217|Caenorhabditis elegans 2L737 protein. 27 7.5
U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical pr... 26 10.0
AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associa... 26 10.0
AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap (death-as... 26 10.0
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 26 10.0
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 26 10.0
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Frame = -3
Query: 357 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 262
++C+ +PAR+ G PGP GQ GE H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 383 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 282
L G+P ++G++ P+ EG++ G ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333
>Z66521-19|CAA91404.2| 217|Caenorhabditis elegans Hypothetical
protein VW02B12L.4 protein.
Length = 217
Score = 26.6 bits (56), Expect = 7.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 362 WGIIANPNPQHEGV 321
WG+IA P PQH+ +
Sbjct: 29 WGMIARPEPQHDSL 42
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein
145 protein.
Length = 294
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 360 GDNCKPQSPARRSFSGLPGPLGQ 292
GDN +P +P + F G PG GQ
Sbjct: 189 GDNGQPGTPGQDGFPGQPGADGQ 211
>AL031269-4|CAA20335.2| 217|Caenorhabditis elegans Hypothetical
protein VW02B12L.4 protein.
Length = 217
Score = 26.6 bits (56), Expect = 7.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 362 WGIIANPNPQHEGV 321
WG+IA P PQH+ +
Sbjct: 29 WGMIARPEPQHDSL 42
>AF303256-1|AAG50214.1| 217|Caenorhabditis elegans 2L737 protein.
Length = 217
Score = 26.6 bits (56), Expect = 7.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 362 WGIIANPNPQHEGV 321
WG+IA P PQH+ +
Sbjct: 29 WGMIARPEPQHDSL 42
>U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical
protein F07C3.10 protein.
Length = 562
Score = 26.2 bits (55), Expect = 10.0
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 390 LALTRN-SSFMGDNCKPQSPARRSFSGLPGPLGQGEH 283
LALT N SSF+ Q P SG P+GQGEH
Sbjct: 277 LALTSNYSSFLSKMAVLQMPDGICISG---PVGQGEH 310
>AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associated
protein kinase protein.
Length = 1425
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 260 RATLKESACSPWPRGP-GNPLKLLRA 334
RAT++E PW RGP GN + + +A
Sbjct: 277 RATVEECLQHPWIRGPEGNAIDIRKA 302
>AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap
(death-associated protein)kinase homolog protein 1
protein.
Length = 1425
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 260 RATLKESACSPWPRGP-GNPLKLLRA 334
RAT++E PW RGP GN + + +A
Sbjct: 277 RATVEECLQHPWIRGPEGNAIDIRKA 302
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 360 GDNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPGH 244
G+N +P +PA+ G PGP G A S +PGH
Sbjct: 152 GNNGQPGAPAQSGGRGPPGPRGPAGDAGSPG----QPGH 186
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 360 GDNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPGH 244
G+N +P +PA+ G PGP G A S +PGH
Sbjct: 152 GNNGQPGAPAQSGGRGPPGPRGPAGDAGSPG----QPGH 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,672,713
Number of Sequences: 27780
Number of extensions: 189685
Number of successful extensions: 563
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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