Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0115
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.92
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590... 30 1.6
07_03_0846 - 21983581-21986055 29 2.1
05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014 28 6.5
11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827... 27 8.5
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11... 27 8.5
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 27 8.5
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648... 27 8.5
07_03_0626 + 20060013-20060273,20061017-20061274 27 8.5
05_07_0290 + 29016410-29018920 27 8.5
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 8.5
01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216... 27 8.5
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 321 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 455
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>01_05_0706 +
24457148-24458031,24458621-24458822,24458896-24459080,
24459170-24459503,24459614-24459818,24460022-24460128,
24460220-24460381
Length = 692
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -2
Query: 388 CLEPPDSRGSTVSISLPDSARLASAL----EAFRHNPADGSSHHRPLGRCM 248
C E RG+ + +L RLA AL EA R +PA+G +H R G C+
Sbjct: 245 CPESAACRGNRAA-ALAGLGRLADALRDCEEAVRLDPANGRAHSRLAGLCL 294
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -2
Query: 463 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 314
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014
Length = 135
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +3
Query: 183 WLVVAIVILLSTRGTAVSDIWFMHRPSGRWCELPSAGLCLNASKAEASLAESGKDMLTVE 362
WL V ++ S + +A+ +W + + + P A + A A+L + +
Sbjct: 64 WLEVVGRVVGSDKASAMESLWKVVG-AAKHGGGPVAAMARQLPSALATLGAATVPVGASG 122
Query: 363 PRESGGSKQC 392
PR+SGGS++C
Sbjct: 123 PRDSGGSRRC 132
>11_07_0014 +
27379941-27379974,27381975-27382033,27382561-27382782,
27383727-27383810,27385054-27385131,27385716-27385832,
27385956-27386019,27386399-27386402,27386565-27386613,
27388973-27389440
Length = 392
Score = 27.5 bits (58), Expect = 8.5
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -2
Query: 553 LQTIPSPDIELSYIRLRSRDARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEP 377
LQ+ +P + + D KKK S + N R+RV+ FE +R + L
Sbjct: 234 LQSTATPKAPKVKEQFQLGDGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRA 293
Query: 376 PDSRGSTVSISLPDSARLASAL 311
S +T +LPD+ L + L
Sbjct: 294 MASHTNTHRSTLPDTCDLFATL 315
>11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-117344,
117455-117523,118091-118217,120028-120269,120343-120497,
120969-121040,121126-121194,121276-121347,121435-121567,
121661-122166,122255-122789,122943-123018
Length = 937
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 32 AFIATLLFDPSMSALPIIANKIRQALDCSPIKRERELG*TVVRQVSFTL-LMACRCDSNT 208
A +AT+ P P I+ +++ D I+ +REL ++ +S T A +
Sbjct: 823 AEVATMCVKPKGVLRPSISEVLKEIQDAIAIELQRELPSSIHHLMSKTSPSEAVNTTGSV 882
Query: 209 AQYERNRSFGHLVHAPAER 265
E+N SF L+ P R
Sbjct: 883 QDLEQNASFDELLMRPGLR 901
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 127 FDG*TIQRLANFVRNDRKSRHRRIKKQ 47
FD T+++ NFVRN+R S + KQ
Sbjct: 872 FDNYTVEQNINFVRNNRSSDINTVTKQ 898
>09_02_0267 -
6485428-6485895,6488255-6488303,6488466-6488469,
6488849-6488912,6489036-6489152,6489737-6489814,
6491058-6491141,6492086-6492307,6492835-6492893,
6494894-6494927
Length = 392
Score = 27.5 bits (58), Expect = 8.5
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -2
Query: 553 LQTIPSPDIELSYIRLRSRDARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEP 377
LQ+ +P + + D KKK S + N R+RV+ FE +R + L
Sbjct: 234 LQSTATPKAPKVKEQFQLGDGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRA 293
Query: 376 PDSRGSTVSISLPDSARLASAL 311
S +T +LPD+ L + L
Sbjct: 294 MASHTNTHRSTLPDTCDLFATL 315
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 333 RLGWLRP*RRSGIIP 289
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>05_07_0290 + 29016410-29018920
Length = 836
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 275 APPAARPVHEPNVRNCGSSRT 213
APP+ARP H P + N + RT
Sbjct: 17 APPSARPRHAPPLLNAAALRT 37
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 340 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 444
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_07_0370 -
43119049-43120278,43121376-43121420,43121421-43121662,
43121908-43122686,43123123-43123463,43123565-43123785,
43123866-43124176,43124257-43124516,43124836-43124918,
43124940-43125036,43125132-43125305,43126215-43126592
Length = 1386
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -2
Query: 457 RDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGS 278
R P + S F+ E SH + S+ ++S S + AFR++ A+ +
Sbjct: 622 RTPIRNYKEPSSFQIERDSSASHSFQ----ESSSPNMSKSPSLQKTHGFLAFRNSDANHN 677
Query: 277 SHHRP--LGRCMNQMSETAVPLVLS 209
SH P QM+ET +P V S
Sbjct: 678 SHESPNIQSPPSEQMAETRLPTVAS 702
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,488
Number of Sequences: 37544
Number of extensions: 366695
Number of successful extensions: 1002
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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