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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0115
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   0.92 
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590...    30   1.6  
07_03_0846 - 21983581-21986055                                         29   2.1  
05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014     28   6.5  
11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827...    27   8.5  
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11...    27   8.5  
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845...    27   8.5  
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648...    27   8.5  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   8.5  
05_07_0290 + 29016410-29018920                                         27   8.5  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    27   8.5  
01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216...    27   8.5  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 321 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 455
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>01_05_0706 +
           24457148-24458031,24458621-24458822,24458896-24459080,
           24459170-24459503,24459614-24459818,24460022-24460128,
           24460220-24460381
          Length = 692

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -2

Query: 388 CLEPPDSRGSTVSISLPDSARLASAL----EAFRHNPADGSSHHRPLGRCM 248
           C E    RG+  + +L    RLA AL    EA R +PA+G +H R  G C+
Sbjct: 245 CPESAACRGNRAA-ALAGLGRLADALRDCEEAVRLDPANGRAHSRLAGLCL 294


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -2

Query: 463 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 314
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014
          Length = 135

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +3

Query: 183 WLVVAIVILLSTRGTAVSDIWFMHRPSGRWCELPSAGLCLNASKAEASLAESGKDMLTVE 362
           WL V   ++ S + +A+  +W +   + +    P A +      A A+L  +   +    
Sbjct: 64  WLEVVGRVVGSDKASAMESLWKVVG-AAKHGGGPVAAMARQLPSALATLGAATVPVGASG 122

Query: 363 PRESGGSKQC 392
           PR+SGGS++C
Sbjct: 123 PRDSGGSRRC 132


>11_07_0014 +
           27379941-27379974,27381975-27382033,27382561-27382782,
           27383727-27383810,27385054-27385131,27385716-27385832,
           27385956-27386019,27386399-27386402,27386565-27386613,
           27388973-27389440
          Length = 392

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -2

Query: 553 LQTIPSPDIELSYIRLRSRDARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEP 377
           LQ+  +P       + +  D   KKK  S   +  N  R+RV+ FE   +R  +   L  
Sbjct: 234 LQSTATPKAPKVKEQFQLGDGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRA 293

Query: 376 PDSRGSTVSISLPDSARLASAL 311
             S  +T   +LPD+  L + L
Sbjct: 294 MASHTNTHRSTLPDTCDLFATL 315


>11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-117344,
            117455-117523,118091-118217,120028-120269,120343-120497,
            120969-121040,121126-121194,121276-121347,121435-121567,
            121661-122166,122255-122789,122943-123018
          Length = 937

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +2

Query: 32   AFIATLLFDPSMSALPIIANKIRQALDCSPIKRERELG*TVVRQVSFTL-LMACRCDSNT 208
            A +AT+   P     P I+  +++  D   I+ +REL  ++   +S T    A     + 
Sbjct: 823  AEVATMCVKPKGVLRPSISEVLKEIQDAIAIELQRELPSSIHHLMSKTSPSEAVNTTGSV 882

Query: 209  AQYERNRSFGHLVHAPAER 265
               E+N SF  L+  P  R
Sbjct: 883  QDLEQNASFDELLMRPGLR 901


>10_06_0143 -
           11183574-11183761,11183989-11184344,11184437-11184592,
           11184825-11184994,11185906-11186064,11186856-11187164,
           11187281-11187576,11187825-11188174,11188279-11188434,
           11188634-11188803,11189289-11189447,11190702-11191010,
           11191172-11191458,11191911-11192263,11192366-11192521,
           11192680-11192849,11195800-11195958,11196937-11197254,
           11197658-11197786
          Length = 1449

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 127 FDG*TIQRLANFVRNDRKSRHRRIKKQ 47
           FD  T+++  NFVRN+R S    + KQ
Sbjct: 872 FDNYTVEQNINFVRNNRSSDINTVTKQ 898


>09_02_0267 -
           6485428-6485895,6488255-6488303,6488466-6488469,
           6488849-6488912,6489036-6489152,6489737-6489814,
           6491058-6491141,6492086-6492307,6492835-6492893,
           6494894-6494927
          Length = 392

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -2

Query: 553 LQTIPSPDIELSYIRLRSRDARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEP 377
           LQ+  +P       + +  D   KKK  S   +  N  R+RV+ FE   +R  +   L  
Sbjct: 234 LQSTATPKAPKVKEQFQLGDGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRA 293

Query: 376 PDSRGSTVSISLPDSARLASAL 311
             S  +T   +LPD+  L + L
Sbjct: 294 MASHTNTHRSTLPDTCDLFATL 315


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 333 RLGWLRP*RRSGIIP 289
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>05_07_0290 + 29016410-29018920
          Length = 836

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 275 APPAARPVHEPNVRNCGSSRT 213
           APP+ARP H P + N  + RT
Sbjct: 17  APPSARPRHAPPLLNAAALRT 37


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 340 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 444
           AR C  W PESR  ++ V  ++A    ++R+   A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483


>01_07_0370 -
           43119049-43120278,43121376-43121420,43121421-43121662,
           43121908-43122686,43123123-43123463,43123565-43123785,
           43123866-43124176,43124257-43124516,43124836-43124918,
           43124940-43125036,43125132-43125305,43126215-43126592
          Length = 1386

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -2

Query: 457 RDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGS 278
           R P    +  S F+ E     SH  +      S+ ++S   S +      AFR++ A+ +
Sbjct: 622 RTPIRNYKEPSSFQIERDSSASHSFQ----ESSSPNMSKSPSLQKTHGFLAFRNSDANHN 677

Query: 277 SHHRP--LGRCMNQMSETAVPLVLS 209
           SH  P        QM+ET +P V S
Sbjct: 678 SHESPNIQSPPSEQMAETRLPTVAS 702


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,488
Number of Sequences: 37544
Number of extensions: 366695
Number of successful extensions: 1002
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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