Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0114
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   125   6e-30
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    29   0.40 
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   4.9  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   6.4  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   6.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   8.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.5  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  125 bits (301), Expect = 6e-30
 Identities = 51/76 (67%), Positives = 64/76 (84%)
 Frame = +1

Query: 268 VFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDP 447
           +F  +GK+TP+  RFSTVGGE G+ DT RDPRGFA+KFYTD+G++D+VGNNTP+FF+RDP
Sbjct: 84  MFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDEGIFDMVGNNTPVFFLRDP 143

Query: 448 TLFPSFIHTQKRTLQH 495
             FP FIHTQKR  Q+
Sbjct: 144 AKFPLFIHTQKRNPQN 159



 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 41/66 (62%), Positives = 46/66 (69%)
 Frame = +2

Query: 56  TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 235
           TT +G P+    A   VGK GP LLQD + +D    FDRERIPERVVHAKG+GAFG FE 
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFEC 72

Query: 236 THDITK 253
           T DITK
Sbjct: 73  TDDITK 78



 Score = 33.9 bits (74), Expect = 0.018
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 476 RREPCNTSERSDMFWDFLTLRPETIHQLLYM 568
           +R P N  + + MFWD+L+   E+IHQ++ +
Sbjct: 154 KRNPQNDMKDATMFWDYLSQNAESIHQVMIL 184


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 433 FIRDPTLFPSFIHTQKRTLQ 492
           +++DPTL P F+HT  R +Q
Sbjct: 506 WVKDPTLTPKFLHTSYRAVQ 525


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 347 VSADPLSPPTVENLTAIGVLLPMDSNTL 264
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 2   TDQLINYKKTLKDSPGFIT-TKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRER 178
           TDQ  +     K S   ++ ++SG P+  +  ++   +NGP+ ++++NF  ++ +F +  
Sbjct: 101 TDQNESQASQAKQSSAQLSDSESGYPLDHEE-MRISEENGPSHIENLNFFSDIDNFSKTS 159

Query: 179 IPE 187
             E
Sbjct: 160 AEE 162


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +3

Query: 411 WK*YSHF---LYKRSNIIPEFYPYSEENPA 491
           WK Y      +++++N++ EF+PYS  NP+
Sbjct: 550 WKKYLELQLTMFRQNNMLTEFHPYS-SNPS 578


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 602 YVCTIRNPRSPTCKEVDGWSLVLR 531
           Y  TI+ PRSP+ +  D  S +++
Sbjct: 435 YSATIQTPRSPSLRRADSTSHIIK 458


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 271  FESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNT 423
            F S+  +    + FS  G E      +R    F++K    DGVW+L  N T
Sbjct: 1199 FPSVYSKDNPNLLFSMTGFEVRILPKIRQNEEFSLK----DGVWNLTDNRT 1245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,620
Number of Sequences: 5004
Number of extensions: 57984
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)