Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0114
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 99 1e-21
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 99 2e-21
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 94 7e-20
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 31 0.93
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 29 3.7
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 5.0
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 28 5.0
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 28 6.5
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 28 6.5
05_03_0586 + 15782645-15782721,15782781-15783405 28 6.5
05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194 28 6.5
02_04_0493 + 23435395-23436003 28 6.5
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939... 28 6.5
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 99 bits (238), Expect = 1e-21
Identities = 52/105 (49%), Positives = 66/105 (62%)
Frame = +1
Query: 253 VSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIF 432
++ A S G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT +G WDL+GNN P+F
Sbjct: 96 ITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLGNNFPVF 155
Query: 433 FIRDPTLFPSFIHTQKRTLQHI*KIRHVLGLFDLKTRDHPSTSLH 567
FIRD FP IH K + ++ +FD + HP SLH
Sbjct: 156 FIRDGIKFPDVIHAFKPNPRS--HVQEYWRVFDFLSH-HPE-SLH 196
Score = 82.2 bits (194), Expect = 3e-16
Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 2/185 (1%)
Frame = +2
Query: 56 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 235
TT +GAPV TVG GP LL+D + +++++ F RERIPERVVHA+GA A G+FE
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFEC 89
Query: 236 THDITKSVLPKYL-SP*AKGHRLLLDSQQLVERVDXXXXXXXXXXXXXSSILMMECGI*L 412
THD+T +L SP A+ ++ S + ER +
Sbjct: 90 THDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLG 149
Query: 413 EIILPFSL*EIQHYSRVLSILRREPCNTSERSDMFWDFLTLRPETIHQLLYMLETVDS*W 592
F + + + V+ + P + + +DFL+ PE++H ++ + V
Sbjct: 150 NNFPVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFLFDDVGIPT 209
Query: 593 -YRHM 604
YRHM
Sbjct: 210 DYRHM 214
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 99.1 bits (236), Expect = 2e-21
Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Frame = +1
Query: 253 VSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIF 432
++ A + G +TP+ VRFSTV E GS +T+RDPRGFA+KFYT +G WDLVGNN P+F
Sbjct: 84 LTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTREGNWDLVGNNFPVF 143
Query: 433 FIRDPTLFPSFIHTQK-RTLQHI*KIRHVLGLFDLKTRDHPSTSLHV 570
FIRD FP +H+ K H+ + +L F HP SLH+
Sbjct: 144 FIRDGMKFPDMVHSLKPNPKSHVQENWRILDFFS----HHPE-SLHM 185
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/73 (54%), Positives = 52/73 (71%)
Frame = +2
Query: 56 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 235
+T SGAPV TVG GP LL+D + ++++++FDRERIPERVVHA+GA A G+FEV
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEV 77
Query: 236 THDITKSVLPKYL 274
THDIT +L
Sbjct: 78 THDITHLTCADFL 90
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 94.3 bits (224), Expect = 7e-20
Identities = 43/76 (56%), Positives = 54/76 (71%)
Frame = +1
Query: 253 VSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIF 432
++ A + G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT +G +DLVGNN P+F
Sbjct: 84 LTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMPVF 143
Query: 433 FIRDPTLFPSFIHTQK 480
FIRD FP +H K
Sbjct: 144 FIRDGMKFPDMVHAFK 159
Score = 89.8 bits (213), Expect = 1e-18
Identities = 41/75 (54%), Positives = 54/75 (72%)
Frame = +2
Query: 50 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYF 229
F TT SGAPV + TVG+ GP LL+D + +++++ FDRERIPERVVHA+GA A G+F
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFF 75
Query: 230 EVTHDITKSVLPKYL 274
EVTHDI+ +L
Sbjct: 76 EVTHDISHLTCADFL 90
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 448 LDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLH 323
+D+L K + QL H Q + LQQ+ H+Q Q ++ LH
Sbjct: 376 IDMLIAKIAHLQQLQQQGHSQQQQLQQSTISHQQAQSLNQLH 417
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 95 IQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYF 229
++ +GK+ AL +D NF + SS D R+ E KG YF
Sbjct: 32 MEKLGKDQDAL-EDANFQQKPSSVDLNRLMELANSEKGVSQMQYF 75
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 147 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 37
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -1
Query: 421 YYFQLNPTLHHQYRTLQQNLEGHEQYQQIHS 329
Y++ +PTL H+YR + +L +EQ QQ+ S
Sbjct: 363 YFYDDDPTLEHRYRRCRPDL--YEQDQQVVS 391
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 110 KNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFG 223
KNG ++LQ V+ + S D ++I + H G G FG
Sbjct: 397 KNGGSILQKVDNIMIFSKDDLKKITKNNSHVIGQGGFG 434
>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 250 QVSAAKVFESIGKRTPIAVRFSTVGGES 333
QVS A V +S +R P V+F T GE+
Sbjct: 1182 QVSRAVVLDSCVERNPTTVKFGTTHGEN 1209
>05_03_0586 + 15782645-15782721,15782781-15783405
Length = 233
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 207 PLACTTRSGIRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGAPDLV 58
P+ C + + +++ DD + FLPT C ++L+ GAP L+
Sbjct: 143 PIVCCSSACWKAVGHDDQQCGHCPGQRRG--FLPTGCCSLLLSIGAPSLL 190
>05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194
Length = 68
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 463 NSGIMLDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLHQLL 314
N ++ + L + W Q P + Y T++++ GHE YQ+ LL
Sbjct: 7 NPCVLDNKLEQPWPQKLQPKPIVTDVYSTVKRDGHGHEMYQEFRFRRWLL 56
>02_04_0493 + 23435395-23436003
Length = 202
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 147 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL 22
R L SC GP PT C ++I P+L +PG++ V L
Sbjct: 111 RCLLSC--CGPMDPTSCTDLVIDLADPELWYCRPGDNHWVKL 150
>01_06_1818 -
40093327-40093384,40093501-40093580,40093661-40093946,
40095007-40095291,40095386-40095513,40095625-40096560,
40096650-40096712,40096801-40096854,40096963-40097139,
40097452-40097583,40097666-40097785,40097935-40098627,
40098760-40099158,40099263-40099271
Length = 1139
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 250 QVSAAKVFESIGKRTPIAVRFSTVG---GESGSADTVRDPRGFAVKFYTDDGVW 402
QVS+ +V S G+ T + ST G GES A VR P G K+ + +W
Sbjct: 162 QVSSPEVDWSYGEPTEMLTSGSTDGEGSGESAGAYIVRIPCGPRDKYLRKEALW 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,587
Number of Sequences: 37544
Number of extensions: 374117
Number of successful extensions: 993
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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