Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0114
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.43 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 391 HQYRTLQQNLEGHEQYQQIHSLHQLLRI*QQS 296
           HQ +  QQ+L+ HEQ+       Q     QQS
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQS 217



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 394 HHQYRTLQQNLEGHEQYQQIHSLHQLLRI*QQS 296
           H Q +  Q   +  +Q+ Q H  H + +  QQS
Sbjct: 178 HMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQS 210


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 529 DLKTRDHPSTSLHVGDRGFLMV 594
           +L TR+HPS +  + + G + V
Sbjct: 346 NLATREHPSRNFTMSEDGMIEV 367


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 491 CRVLF*VWIKLGNNVGSLIKKMG 423
           CR+ F  W+  G  V   + K G
Sbjct: 183 CRINFGSWVHSGEEVNIFLDKKG 205



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 355 DPRGFAVKFYTDDGVWD 405
           D +GF +  YT++  WD
Sbjct: 202 DKKGFHMDGYTNNSKWD 218


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 552 INFFTCWRPW 581
           I FF CW P+
Sbjct: 267 ITFFICWAPF 276


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 267 FGSTDLVMS*VTSKYPKAPAPLACTTRSG 181
           FGS D  ++ +  + P+ P  L    +SG
Sbjct: 861 FGSDDTSINMIVQEVPEVPYGLKVLDKSG 889


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,636
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)