Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0109
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 49 3e-07
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 48 1e-06
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 36 0.003
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 33 0.018
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 27 1.2
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 1.6
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 27 2.1
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 4.8
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 4.8
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 4.8
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 25 8.4
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 8.4
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc... 25 8.4
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 8.4
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 49.2 bits (112), Expect = 3e-07
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 262 LNVEVVEATDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHF--SLPMS 435
+ V+V++ATDL D NG SDPFV L Y T TLNP + E F LP
Sbjct: 1039 MTVDVIKATDLPAADSNGKSDPFVVFELQGEEV--YRTKTHKRTLNPTFNESFEVELPCK 1096
Query: 436 GTVNEDSLCLEVWDF 480
T N + + WDF
Sbjct: 1097 QTCNFVANVFD-WDF 1110
Score = 32.3 bits (70), Expect = 0.042
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +1
Query: 262 LNVEVVEATDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSGT 441
+ + + A +L K P D + I MS+++ ++ T V + +NP W+E+ P+
Sbjct: 706 IRIHLRSANNLHSKIPGKKCDSYARI--MSHNTKQFRTVVIASNVNPFWDEYMYAPV--I 761
Query: 442 VNEDSLCLEVWDFD 483
D L+V +++
Sbjct: 762 TKHDIFFLQVMNYN 775
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 47.6 bits (108), Expect = 1e-06
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 268 VEVVEATDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPM--SGT 441
V + A DL +D NGLSD ++T+ Y T V LNP+W E+ +P+
Sbjct: 473 VHINRAEDLSKQDVNGLSDAYITVGFHKFGKPLYCTRVVKQDLNPIWNEYAFIPVFPDQV 532
Query: 442 VNEDSLCLEVWDFD 483
+ + +E+WD D
Sbjct: 533 KAGEKISIELWDSD 546
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 35.9 bits (79), Expect = 0.003
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +1
Query: 247 ASGLMLNVEVVEATDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSL 426
A + V +V A L +D DPF + + +H T++K TLNP W E F +
Sbjct: 5 AQSRRIRVTIVAADGLYKRDVFRFPDPFAVLTVDGEQTHT-TTAIKK-TLNPYWNETFEV 62
Query: 427 PMSGTVNEDSLCLEVWD 477
+ ++ ++V+D
Sbjct: 63 ---NVTDNSTIAIQVFD 76
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 33.5 bits (73), Expect = 0.018
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +1
Query: 319 SDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSGTVNEDSLCLEVWDFDPAE 492
SDPFV + L N + + V LNPVW E + + V D L L +D+D E
Sbjct: 1098 SDPFVVLKL--NGESAFKSKVIKKNLNPVWNEEADIVVQNRV-LDVLELVCYDWDMGE 1152
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 340 YLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSGTVNED 453
Y + NSS+ ++TS + G L + PM T++ED
Sbjct: 198 YSLQNSSNIFSTSSRKGDLPKFSDYSAEKPMYDTISED 235
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 274 VVEATDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSL 426
+V A L +D DPF + + +H T V ++NP W E F +
Sbjct: 12 IVAADGLSKRDLFRQPDPFAILTVDGEQTH--TTKVIKKSVNPYWNEGFEV 60
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +1
Query: 259 MLNVEVVEATDLVPKDPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHFSLPMSG 438
M V + T +V P+ D F T+ + + Y+ LNP W ++ ++P+
Sbjct: 405 METVLATKGTGVVTSVPSDSPDDFATLTELRKKAEFYH-------LNPEWMKYEAVPIIR 457
Query: 439 TVNEDSLCLE 468
T + +C E
Sbjct: 458 TPSYGDMCAE 467
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.4 bits (53), Expect = 4.8
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 350 DIK*IVTNGSLRPF-GSLGTKSVASTTSTFSINPEAL*PPL 231
DIK + T L F S AST+S FS PE+L PL
Sbjct: 425 DIKLLNTLSPLETFFWCCSFPSTASTSSPFSYYPESLPTPL 465
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 304 DPNGLSDPFVTIYLMSNSSHRYNTSVKSGTLNPVWEEHF 420
D N L+DPFVTI SS+ + S + + EHF
Sbjct: 308 DKNSLNDPFVTI---RKSSYEHEISEEHKKHSKKRSEHF 343
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 4.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 156 PTSQPTSHPPTLC 118
P S PTS+PP LC
Sbjct: 207 PYSSPTSYPPPLC 219
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 8 LLDTDSEPDEHDKIGRIIEAVGW 76
L+ +DS D+HD ++ +GW
Sbjct: 252 LISSDSSVDDHDNEQDDVDLIGW 274
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -3
Query: 448 HSQCQTWVKK 419
HSQ QTWVKK
Sbjct: 367 HSQLQTWVKK 376
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 497 TVSAGSKSHTSKQRESSFTVP 435
T SAGSK K R SFT P
Sbjct: 445 TSSAGSKPFNRKSRNRSFTNP 465
>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 197
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 107 KVFPSIVHQYSSQLPRLSVLSYHVH 33
++FPSI+ + S P+L VL Y +H
Sbjct: 172 ELFPSIMADFQSNHPKLPVL-YTIH 195
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 279 DHLDIQHQPGGSLASALVRSCVCLSLP 199
D D+ + GG+L S +V C C+S P
Sbjct: 211 DRPDVVYMDGGNLKSTIV--CQCVSCP 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,218
Number of Sequences: 5004
Number of extensions: 41695
Number of successful extensions: 136
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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